Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq106 156 6e-33 seq87 141 1e-28 >seq106 Length=3132237 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171880 ACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATC 171939 || || ||||| || || |||||||| ||||| ||||| || ||||| ||||| || || Sbjct 2289122 ACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATGTC 2289063 Query 171940 AAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCT 171999 || ||||||| || || ||||| |||||||| || || ||||| || || || || || Sbjct 2289062 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCGCC 2289003 Query 172000 GGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACT 172059 || || ||||| || ||||| || ||||| || || |||||| | || ||||||||||| Sbjct 2289002 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTACC 2288943 Query 172060 CTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || ||||| || || | || || ||||| Sbjct 2288942 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288914 >seq87 Length=36794 Score = 141 bits (156), Expect = 1e-28 Identities = 146/188 (78%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 52290 GGCGTTGTCGATGCGGGAGAAGTTGCATGTACCGGTAGGCTGATGTTCCTCGGGCTTGAG 52349 ||||||||||||||||||||||||||| || |||| ||||| || |||||||||||||| Sbjct 17237 GGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGCTCCTCGGGCTTGAG 17296 Query 52350 GGCGAAGGAGTACGCGTAAATACC---GGGCATGGGGCAACCAGAGTGGTGGTTGAAGGG 52406 ||||||||||| ||| || || || | ||||| | |||||| | | |||| Sbjct 17297 TCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGGATGTTGGTGTGGTGCTGGTAGGG 17356 Query 52407 CTGCACGGAGTTGAAGTACTTG-CCAGTCTGCTCCTTGAACCTGTCCTGGCCGTTAAGCA 52465 |||||| |||||||||| | |||| | |||| | ||||||||| |||||||| ||| Sbjct 17357 CTGCACCAGGTTGAAGTACGAGCCCAGAC-GCTCGTCGAACCTGTCGTGGCCGTTGAGCT 17415 Query 52466 CAAGCTTG 52473 |||||| Sbjct 17416 GCAGCTTG 17423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861528332320