Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq18 670 0.0 >seq18 Length=145863 Score = 670 bits (742), Expect = 0.0 Identities = 737/976 (76%), Gaps = 10/976 (1%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | ||||| ||||| | || ||||| || || || ||||| || ||| || Sbjct 120610 ACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGATCCCTA--CTCTTTTAA 120553 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 || |||||| | || |||||||| ||||||| ||||| ||||| ||||||||||| Sbjct 120552 -CTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGT 120494 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 ||||| || || || | || || || | || |||||||||||||| || || || || Sbjct 120493 ATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTT 120434 Query 41432 GTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTT 41491 ||||| | || || || || || ||||||||||||||||||||||||||| ||||| Sbjct 120433 GTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTT 120374 Query 41492 GATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGC 41551 || |||||||| |||||||| ||||| | |||||| | ||||| |||||| || | ||| Sbjct 120373 GACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGC 120314 Query 41552 GTCTTTGCT--TACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCT 41609 | ||||| |||||||| || |||||||||||| | || |||| ||| | || | Sbjct 120313 AT--TTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCAT 120256 Query 41610 GGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATC 41669 ||||| ||| || |||||||| || || || ||||| |||||||| ||| | | || | Sbjct 120255 GGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACC 120196 Query 41670 CGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACT 41729 | | || || || || || || |||| |||||| ||||| || || || || ||||||| Sbjct 120195 CTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACT 120136 Query 41730 ACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTG 41789 |||| | || ||||| ||||||||||| || |||||||| || || |||||||| |||| Sbjct 120135 TCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTG 120076 Query 41790 TGGCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGT 41849 | || || || || ||||| | ||||| |||||||||||| || || || || | Sbjct 120075 TTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTT 120016 Query 41850 CACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAG 41909 |||| || ||||| || ||||| | | ||| ||| ||||||||| || ||||||| Sbjct 120015 CACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAG 119956 Query 41910 AGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAAT 41969 | ||||| |||||||| ||||||||||| ||||| || |||||||| || |||||||||| Sbjct 119955 AAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAAT 119896 Query 41970 ATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAG 42029 | ||| || || || || ||| ||||| ||||| |||||||| |||||||| || | Sbjct 119895 ACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTG 119836 Query 42030 GTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACT 42089 |||| |||||| |||| ||||| | ||||| ||||| |||||| | || || ||||||| Sbjct 119835 GTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTAACGGATTCAACT 119776 Query 42090 TTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTA 42149 | ||||| || | ||| || | || | || |||||||| |||| |||||| | | Sbjct 119775 TCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACACTTGGGGTGACATCATCA 119716 Query 42150 ACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTG 42209 |||||||||||||||| | || || ||||| || | ||||||||||||||||| || | Sbjct 119715 ACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCACACAACTTCCCACTAG 119656 Query 42210 ACCTTGCATCCGTGGA 42225 ||||||| || || || Sbjct 119655 ACCTTGCTTCAGTAGA 119640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146214215952624