Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq18 672 0.0 >seq18 Length=145863 Score = 672 bits (744), Expect = 0.0 Identities = 754/1004 (75%), Gaps = 6/1004 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||| | ||||| ||| ||| | ||||| ||||| |||| |||||| Sbjct 120640 TGGGCTCGCTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTT 120581 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGTTTT-ATTGTCGCTTTCAT 42398 ||||| || ||||| || ||| | |||| || | ||| || ||| |||| || | Sbjct 120580 GGTGTTCTAATGATCCCTACTCTTTTAACTGCAACTTC-TGTGTTCATTATCGCATTTGT 120522 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| |||||||| ||||| || ||||| ||||| || || ||||| || || Sbjct 120521 TGCTGCACCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTA 120462 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||||||||| |||||||| || || |||| ||||||||||| || || || Sbjct 120461 CGGTAACAACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTT 120402 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| | | |||||||||||||| ||||| || || ||||| || Sbjct 120401 CTACCCAATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCA 120342 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || |||| | |||||| | | || || | || ||| |||| || || |||||||| Sbjct 120341 ACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACT 120282 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 ||| | ||| | || ||| | || |||||| ||| ||||||||||| || || || || Sbjct 120281 TTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGC 120222 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | |||| || | || |||||||| || |||||||| ||||| Sbjct 120221 TGCTACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCC 120162 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 | | || ||||| || || |||||||||||| | || ||||| ||||| || ||||| || Sbjct 120161 TTTGGGTATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCT 120102 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || ||||| |||||||||||||| || || || ||||| || | |||||||| Sbjct 120101 TATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGC 120042 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAA--AGC 42936 |||||| ||| ||| || || ||||| ||| | |||||||| ||||| |||||| ||| Sbjct 120041 TATGCACGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGC 119982 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| ||| ||||| ||||||||||| || || ||||| ||||||||||| || || Sbjct 119981 --AAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACAC 119924 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCAC 43056 ||||||||||| || || ||||||||||| || || || || || ||| || | ||| Sbjct 119923 GGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCAC 119864 Query 43057 TTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACT 43116 ||||| ||||| |||||||| || || || || ||||| ||| ||||||| || |||| Sbjct 119863 TTCTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACT 119804 Query 43117 ATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCAT 43176 ||||| || ||| | || || || ||||| ||||| ||| |||| || ||| || Sbjct 119803 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGC 119744 Query 43177 GTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCAC 43236 || ||| ||||||| ||| || | || |||||||||||||| | || || |||||| Sbjct 119743 GTTATCAACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCAC 119684 Query 43237 GAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGA 43280 || | || ||||| |||||||| || || ||||| || || || Sbjct 119683 GAAAGAAACGCACACAACTTCCCACTAGACCTTGCTTCAGTAGA 119640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143532619328088