Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq18 491 1e-134 >seq18 Length=145863 Score = 491 bits (544), Expect = 1e-134 Identities = 711/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932 ||| || | ||| ||||| ||||| || || || | |||||||| ||||| | || || Sbjct 119645 TGAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAG 119704 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACA-TCTACTA 25991 ||| || ||||| | | ||| |||| || | | || | | || | | ||||| | Sbjct 119705 GTTGGCACGGTTGATGATGTCACCCCAAGT-GTTGATAACGCGACCTTGAGAGTCTACAA 119763 Query 25992 CTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATG 26051 |||||||||| ||||| || || || ||||| |||||||| || ||||||| | || | Sbjct 119764 CTGACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAG 119823 Query 26052 TCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTAT 26111 | | ||| || ||||| || ||||||| |||||| ||||| ||||| ||||| ||| | Sbjct 119824 TAAACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGT 119883 Query 26112 TAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTAT 26171 | || || || || || |||| | |||||||| ||||||||||| ||||| || | Sbjct 119884 TGAATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGT 119943 Query 26172 ATGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTT 26231 | || ||||| ||||| || || || || ||| || ||| | | ||| || |||| Sbjct 119944 AAGTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTT 120003 Query 26232 CTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGA 26291 | |||||||| ||||| || | | ||||||||||| | |||||| | ||||||| Sbjct 120004 CACGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGA 120063 Query 26292 AAACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGA 26351 | || |||||||||||| ||| |||||||||||||| || || || || || ||||||| Sbjct 120064 ACACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGA 120123 Query 26352 ATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCC 26411 | || | ||| ||||| ||||| || || ||||| | |||||| ||||| || | Sbjct 120124 AAACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAAC 120183 Query 26412 CTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATG 26471 |||| |||| ||| || | | ||| || || ||| || | | |||||| | || | Sbjct 120184 CTTGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAG 120243 Query 26472 CAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT 26531 | ||| |||||||| | |||||||| | | |||| |||||||||| | || ||| Sbjct 120244 CTACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACC--CAT 120301 Query 26532 AT-GCTGCTACT-CCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTA 26589 | || || | | |||| |||||||| | | || ||||| || || || || ||||| Sbjct 120302 GTAGCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTA 120361 Query 26590 TAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTT 26649 ||||| ||||| |||| |||||||||| || ||||| || || || || |||||||| Sbjct 120362 AAGCCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTT 120421 Query 26650 AGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAAC 26709 || | || || || || || || || || ||||| ||||| | || || || || || Sbjct 120422 TGATGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATAC 120481 Query 26710 TGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAAC 26768 |||||||| || ||||| || |||||||| ||||| || | || || | || || || Sbjct 120482 AGGCTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACAC 120541 Query 26769 ATGTAGTGGCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGA 26827 | | ||| || | | | || |||| ||||| || || || ||||| || | || || Sbjct 120542 A-GAAGTTGCAGTTAAAAGAGTAGGG-ATCATTAGAACACCAAACCAACCAATGTAAAGG 120599 Query 26828 CGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 ||||| ||||| || |||||||| ||||| || Sbjct 120600 CGGTTTTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147711814067520