Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq18 834 0.0 >seq18 Length=145863 Score = 834 bits (924), Expect = 0.0 Identities = 777/984 (79%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||||| ||| |||| |||||| | || | |||||||| |||||||| | Sbjct 120630 TCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAA 120571 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| || | |||| || | |||||| |||| || |||||||||||| Sbjct 120570 TGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCTC 120511 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 |||||||||| |||||||| ||||| || || | |||||| || | || |||||||||| Sbjct 120510 CTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACA 120451 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 |||| |||||||||||||| |||| ||||||||||||||||| |||||||| || |||| Sbjct 120450 TCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATTT 120391 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| || | ||||| || ||| | ||||| |||||||||| |||||| | || | Sbjct 120390 GGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTAT 120331 Query 155270 TCCACTTCCTTATCGGAATCA-CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGT 155328 |||||| | | || || | || ||| |||||| ||||||||||||||| |||| Sbjct 120330 GTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCGT 120272 Query 155329 CTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCT 155388 | || |||||||| |||||| ||| || |||||||||||||| | ||||| ||| Sbjct 120271 TTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCT 120212 Query 155389 GTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATC 155448 |||||| | | || ||| ||||||||||||| ||||| |||| |||||| | ||||| Sbjct 120211 GTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATT 120152 Query 155449 TCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCC 155508 || || ||||| |||| ||| | || |||||||| || ||||| |||||||||||||| Sbjct 120151 TCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCA 120092 Query 155509 TTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGT 155568 |||||||||||||| || || |||||||||||||| || |||||||| |||||||||||| Sbjct 120091 TTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGT 120032 Query 155569 TCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGT 155628 || | || || |||||||| |||||||||||||||||| | || || ||| |||| Sbjct 120031 TCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGGT 119972 Query 155629 TACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGT 155688 ||||| ||||| ||||||||||||||||| |||||||||||||| || || ||||| ||| Sbjct 119971 TACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGT 119912 Query 155689 CGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCT 155748 ||||| |||||||| || || || ||||||||||| | |||||||||||||||||| Sbjct 119911 CGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCT 119852 Query 155749 GCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAAC 155808 || |||||||| || | |||||| |||||| | ||| | || || |||||||||||| Sbjct 119851 GCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAAC 119792 Query 155809 CTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACA 155868 |||||||| ||||||||||||||||| || |||||| || ||| || ||| || Sbjct 119791 CTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACACT 119732 Query 155869 TGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCT 155928 |||| ||||| | ||||| || ||||||||||||||||||||||| | ||||| Sbjct 119731 TGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCA 119672 Query 155929 CACAACTTCCCTCTTGACCTTGCT 155952 ||||||||||| || ||||||||| Sbjct 119671 CACAACTTCCCACTAGACCTTGCT 119648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584834425093360