Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq18 654 0.0 >seq18 Length=145863 Score = 654 bits (724), Expect = 0.0 Identities = 741/988 (75%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 40530 GAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGA 40589 ||||| | |||||| || |||||||| ||||| | |||||||||||||||||||| || Sbjct 119646 GAAGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGG 119705 Query 40590 CTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACT 40649 | | ||| | | ||| ||||||| || || ||| | || |||||| ||| Sbjct 119706 TTGGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACT 119765 Query 40650 GACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTA 40709 |||||||| ||||| || || || ||||| || ||||||||||| ||||| | | ||| Sbjct 119766 GACTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTA 119825 Query 40710 AGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTG 40769 | ||| || |||| || || ||||| |||| |||||||| || | ||| |||||| Sbjct 119826 AACCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTG 119885 Query 40770 AATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAA 40829 |||||||| ||||| || ||||| | ||||||||||||||||||||| || ||||| ||| Sbjct 119886 AATGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAA 119945 Query 40830 GTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCC 40889 || || |||| ||||| || || || || ||| |||||| | || || || || Sbjct 119946 GTTTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCA 120005 Query 40890 CGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAG 40949 || || | ||| ||||| || || ||||||||||| | || | | |||||| || Sbjct 120006 CGGATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAAC 120065 Query 40950 ACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAG 41009 || || ||||| || ||||| |||||||||||||| || |||||||| || |||||||| Sbjct 120066 ACACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAA 120125 Query 41010 ACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCC 41069 |||| |||||||||||| ||||| || || |||||||||||||| ||||| ||||| Sbjct 120126 ACAATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCT 120185 Query 41070 TGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCC 41129 ||||||| || || | | ||||||||| ||| |||| | ||| || | ||| || Sbjct 120186 TGACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCT 120245 Query 41130 ACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTAT 41189 ||| |||||||| | ||| |||| | | | ||||||||||||| | ||| ||| Sbjct 120246 ACAGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGTA- 120304 Query 41190 GCTGCTACT-CCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAG 41248 || || | | |||| || |||||| | || || ||||| || || || |||||||| || Sbjct 120305 GCAGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAG 120364 Query 41249 CCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGA 41308 ||| ||||| |||| | |||||||| ||||||||||| || || || |||||||| || Sbjct 120365 CCATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGA 120424 Query 41309 GCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGG 41368 | ||||| ||||| ||||| || || ||||| ||||| | || || || || || || Sbjct 120425 TGTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGG 120484 Query 41369 CTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATG 41427 |||||| || ||||| || |||||||| ||||| || | ||| ||||| ||||| ||| | Sbjct 120485 CTCACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACA-G 120543 Query 41428 TGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGT 41487 || ||||||| | | || |||||||| |||||||||||||| | ||| ||||||| Sbjct 120544 AAGTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGT 120603 Query 41488 TGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | || |||||||| ||||| | ||| || Sbjct 120604 TTTCAGTGCTAGTAACCCATTCACAGAA 120631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143702219114604