Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq18 756 0.0 >seq18 Length=145863 Score = 756 bits (838), Expect = 0.0 Identities = 750/965 (78%), Gaps = 8/965 (1%) Strand=Plus/Plus Query 67361 AGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCC 67420 ||||||||| || ||||||||||| ||||| | |||||||| |||||||| ||||| Sbjct 119648 AGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTT 119707 Query 67421 TGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGA 67480 || | ||| | |||||| ||||||| || || ||| | ||| || || || Sbjct 119708 GGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGA 119767 Query 67481 TTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAA 67540 |||||||||||||| ||||| ||||||||||||||||| || | ||| | ||||| || Sbjct 119768 CTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAA 119827 Query 67541 CCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAA 67600 |||||| | || ||||| | |||||||||||||||||||| | ||||||||||| Sbjct 119828 CCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTGAA 119887 Query 67601 AGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGT 67660 || || || |||||||| | ||||| ||||| || || |||||||||||||||||||| Sbjct 119888 TGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGT 119947 Query 67661 CTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCT 67720 ||||||||||| ||||| |||||||| ||| ||| || | |||||||||||| | Sbjct 119948 TTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCACG 120007 Query 67721 GATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATAC 67780 |||||| |||||||| || ||||||||||||||||| || |||||||||||||| || Sbjct 120008 GATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACAC 120067 Query 67781 ACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACAC 67840 ||| || || |||||||| ||||||||||||||||||||||||||||| |||||||| || Sbjct 120068 ACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAAC 120127 Query 67841 GAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTG 67900 | |||| |||| ||||| || |||||||| | |||||| | || ||||| |||||||| Sbjct 120128 AATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTTG 120187 Query 67901 ACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTAC 67960 ||||| ||| |||| | ||| ||||| || || | ||||| |||||||| ||||| Sbjct 120188 ACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 120247 Query 67961 ACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGC 68020 | |||||| |||||||| || | |||| ||||||||||||||| |||||| ||| || Sbjct 120248 AGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GC 120306 Query 68021 TG-TGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACC 68079 | || || | | |||||| | || | |||||| |||| ||||| || || | || Sbjct 120307 AGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAGCC 120366 Query 68080 ACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAAC 68139 | || || || | || |||||||| || || |||||||| ||||| ||||||||||| Sbjct 120367 ATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGATG 120426 Query 68140 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTT 68199 ||||||||||||||||||||||||||||||||||||| | || ||||||| ||||| | Sbjct 120427 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGGCT 120486 Query 68200 CTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAG 68256 | | |||||||||||| || || |||||||| |||| ||||| || ||||| ||| Sbjct 120487 CACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGAAG 120546 Query 68257 TTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGAT 68316 |||| | | || || ||| ||||| | ||||| |||||||||| || | ||| | Sbjct 120547 TTGCAGTTAAAAG--AG-TAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGT 120603 Query 68317 TGTCA 68321 | ||| Sbjct 120604 TTTCA 120608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566946448794960