Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq18 827 0.0 seq17 576 2e-159 >seq18 Length=145863 Score = 827 bits (916), Expect = 0.0 Identities = 778/986 (79%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 67842 AGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAAACC 67901 ||||||||| || ||||||||||||||||| | || ||||| ||||||||||| | Sbjct 119648 AGCAAGGTCTAGTGGGAAGTTGTGTGCGTTTCTTTCGTGCATTACTTCCATACCAAGGTT 119707 Query 67902 AGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGATAGA 67961 || ||||||| | ||| |||| || | ||| ||| | || | | || Sbjct 119708 GGCACGGTTGATGATGTCACCCCAAGTGTTGATAACGCGACCTTGAGAGTCTACAACTGA 119767 Query 67962 CTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAA 68021 ||||||||||||||| || || |||||||||||||| || | |||||| ||||| || Sbjct 119768 CTGGTTGAAGTTGAATCCGTTAAGGTTGAATGCCATAGTAGAGATACCAAGAGCAGTAAA 119827 Query 68022 CCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAA 68081 |||||||||||| |||||||| ||||||||||||||||| || ||||| ||||||||||| Sbjct 119828 CCAGATACCAACTACAGGCCAAGCAGCAAGGAAGAAGTGAAGTGAACGAGAGTTGTTGAA 119887 Query 68082 CGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGT 68141 || || || |||||||| |||||||| ||||| || ||||||||||||||||||||||| Sbjct 119888 TGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGTGCAGCAACAATGTTGTAAGT 119947 Query 68142 CTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACG 68201 ||||||||||||||||| ||||||||| ||| || || | ||||| |||||||| Sbjct 119948 TTCTTCTTCTTGACCGAATTTGTAACCAGCGTTTGCTGATTCGTTCTCAGTAGTTTCACG 120007 Query 68202 AACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAATAC 68261 | ||||||||||| || || ||||| ||||| || ||| || || ||||| || || Sbjct 120008 GATAAGTGAAGAAGTTACTAGAGAACCGTGCATAGCTGAGAAAAGTGAACCACCGAACAC 120067 Query 68262 GCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACAC 68321 |||||||| || ||||| ||||| |||||||| |||||||||||||| |||||||| || Sbjct 120068 ACCAGCAACACCAAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAAAAC 120127 Query 68322 CAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTG 68381 | |||| |||||||||| || ||||| || | |||||| | || ||||| |||||||| Sbjct 120128 AATCATGAAGTTGAAAGTTCCTGAAATACCCAAAGGCATACCATCTGAGAATGAACCTTG 120187 Query 68382 ACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC 68441 ||||| ||| |||| | ||| || || | || |||||||| ||||||||||| || || Sbjct 120188 ACCGATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTAC 120247 Query 68442 ACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGC 68501 | |||||| |||||||| || | ||| | ||||||||||| ||||| |||||||| || Sbjct 120248 AGCGATCCATGGACGCATTCCTAAACGGAAAGAAAGTTCCCACTCACGACCCATGTA-GC 120306 Query 68502 A-AAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACC 68560 | | || || | | ||||||| | | | |||||| |||||||||| ||||| | || Sbjct 120307 AGCAAATGCCTAGGAAGAAGTGACATACGATTAGTTGGTAAGGACCACCGTTGTAAAGCC 120366 Query 68561 ACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAAC 68620 | || ||||| | || ||||||||||| || || ||||| ||||||||||| ||||| Sbjct 120367 ATTCGTCAAGTGAAGCAGCTTCCCAAATTGGGTAGAAGTGCAGACCAATTGCGTTTGATG 120426 Query 68621 TAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTT 68680 |||||||||||||||||||||||||||||||||| || || || ||||| | ||||| | Sbjct 120427 TAGGAACAACAGCACCAGAAATGATGTTGTTACCGTAAAGTAGAGAACCTGATACAGGCT 120486 Query 68681 CACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATG 68739 |||| |||||||||||||| ||||| || ||||| | || |||| ||||| ||||| Sbjct 120487 CACGGATACCATCGATGTCTACAGGAGGTGCAGCAACAAATGCGATAATGAACACAGA-A 120545 Query 68740 GTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTC 68799 ||||| | | || ||||||||||| || || || |||||||||| |||||||||||| Sbjct 120546 GTTGCAGTTAAAAGAGTAGGGATCATTAGAACACCAAACCAACCAATGTAAAGGCGGTTT 120605 Query 68800 TCTGTGGAAGTCACCCATTCGCAGAA 68825 || ||| ||| |||||||| ||||| Sbjct 120606 TCAGTGCTAGTAACCCATTCACAGAA 120631 >seq17 Length=88650 Score = 576 bits (638), Expect = 2e-159 Identities = 750/1029 (73%), Gaps = 16/1029 (2%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || | ||| || ||||||||||||| |||||||| || | Sbjct 86610 ATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACAAGTTTTTCATGTGGCT 86669 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 | || || |||| |||||| | || |||||| || | |||||||| |||||||||| Sbjct 86670 GGTCCTGAGCCGCCATCCATGCTCTAATACCTTCGTTTAGAAGAATGTTTTTTGTGTAGA 86729 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | |||||||| || ||||| || ||||| | ||||||||| || ||||||||||| || | Sbjct 86730 AAGTCTCGAATTCAGGGTCCTCAGCTGCACGGATCTCTTGTGAAACAAAGTCATATGCTC 86789 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | | ||| |||||||| || |||| ||| || | ||| |||||||||| | ||||| | Sbjct 86790 GTAAGTTAAGAGCAAGTCCGATAACACCAATTGCACTCATCCAAAGACCAGTTACAGGGA 86849 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| | |||||||||||| | ||| | || || || || | ||||||||| || | Sbjct 86850 CAAAAAGCATAAAGAAATGAAGCCAACGTTTGTTTGAGAAAGCTACACCAAAGATTTGTG 86909 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| || ||||| || || ||||| ||||| || ||||| |||| || | || ||||| Sbjct 86910 ACCAAAAACGGTTAGCTGTTACCATAGAGTATGTCTCTTCGGCTTGCGTTGGGTTGAATG 86969 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||||||||| || |||||||||||| | ||||| ||||||||||| | || | Sbjct 86970 CACGGAAAGTGTTCGCACCGTCACCATCTTCAAAAAGAGTGTTCTCTACTGTTGCTCCGT 87029 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| ||| | || | |||| |||| || | |||||| ||||||||||| || || |||| Sbjct 87030 GAATTGCACATAGAAGTGCAGCACCTAGAACACCTGCCACACCCATCATGTGGAAAGGGT 87089 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 | | |||||||| ||||| ||||| | ||| |||| ||||| |||||||| | || | Sbjct 87090 TAAGCGTCCAGTTGTGGAAACCTTGGAAGAAAAGAATAAATCGGAAGATTGCCGCTACAC 87149 Query 67126 CGAAAGAT-GGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTA 67184 | |||| | || || || ||||| | ||||| |||| ||| ||||| || ||||| Sbjct 87150 C-AAAGCTAGGCGCAAAGAACCAGCCTGATTGTCCCAAAGGATAGATAAGGAAGACTGAT 87208 Query 67185 ACAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGAT 67240 || || ||||| ||||| | ||||| |||||||| ||||| ||||| | ||||||| Sbjct 87209 ACGAAGACAGCAATAGGTGCTGAGAAGGCAATAGCGTTGTAAGGACGAAGCTTTACCGAT 87268 Query 67241 GAGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAG 67300 | ||| ||||||||||| || ||||| || ||||| || || || || || || | Sbjct 87269 ----CTTGCAAGTTCAAACTGTCGTAGCATAAACCCAATAAGCGCAAAGGCACCATGTAA 87324 Query 67301 CGCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTC 67360 || || ||| ||| || || || | || |||||| || || || || | ||| Sbjct 87325 AGCTACGAAAGCCCACAGACCACCCAACTGACACCAGCGAGTAAAGTCACCTTGTGCCTC 87384 Query 67361 AGGACCCCAAAGTAGAAGAAGA--GAATGACCCATAGCATCAGCAGGCGTTGACACAGCC 67418 ||| ||||| || ||| || | || |||||||| | || || ||||| || || Sbjct 87385 AGGCCCCCATAG--GAACAACAATGAGTGACCCATGCTGTTTGCTGGAGTTGAAACGGCT 87442 Query 67419 GCTGTGAGAAAATTAGCA-CCCTCAAGATAACTAGACGCGAGTCCGTGAGTGTACCAGCT 67477 ||||| | | || | ||| || || | ||| | || ||||| || |||||||| Sbjct 87443 GCTGTTA-AGAAGTTGCATCCTTCTAAGTAAGAACTTGCAAGTCCATGTGTGTACCAAGA 87501 Query 67478 TGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAG 67537 ||| || || || || || || | ||||||||| | ||| | ||||| || || || || Sbjct 87502 TGTAACGAATGTGGTTCCTGTCAACCAGCCACCTAATGCAAGGTAAGCTGTAGGGAAGAG 87561 Query 67538 AAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATCAAGGAC 67597 | || |||||||| || || || ||||| || || || | ||||||||| | | Sbjct 87562 TAACAGACCAGACCAGCCAACGAACACAAATCGTTCACGGCGCAACCAGTCATCTACTTC 87621 Query 67598 ATCGAACCA 67606 ||| ||||| Sbjct 87622 ATCAAACCA 87630 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 35509 AACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGC 35568 |||||| |||||||| |||||||||||||||| || ||||||| || | ||||| || | Sbjct 47970 AACTCCTTAGGTAGGACTTGAACCTACGACCAACCGGTTAACAGCCGGTCGCTCTACCAC 47911 Query 35569 TGAGCTACTGAGGAT 35583 ||||||||| ||||| Sbjct 47910 TGAGCTACTAAGGAT 47896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572053642027920