Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq87 143 8e-29 seq2 98.7 3e-15 seq106 89.7 2e-12 >seq87 Length=36794 Score = 143 bits (158), Expect = 8e-29 Identities = 154/198 (78%), Gaps = 7/198 (4%) Strand=Plus/Plus Query 181302 CAGAGTAGCATTGTCAATACGCGAGAAATTGCAGGAACCCGATGGCTGGTGCTCCTCTGG 181361 ||| || || ||||| || || ||||| ||||||| || || |||||||||||||| || Sbjct 17231 CAGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGCTCCTC-GG 17289 Query 181362 GCGT-AGCGCAAAAGAGTAGACGTTAATGCCC--GAATCGGGGGCACG--GGTGTGGTGC 181416 || | || | || ||||| ||||| |||||| | | | |||| | | |||||||||| Sbjct 17290 GCTTGAGTCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGG-ATGTTGGTGTGGTGC 17348 Query 181417 TGGAAGGGCTGGACCAGGTCGAAGTAGGTGCCCTCACGCTCCGAGAAGCGGTCCTGGCCA 181476 ||| ||||||| ||||||| |||||| | |||| |||||| ||| | ||| ||||| Sbjct 17349 TGGTAGGGCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAACCTGTCGTGGCCG 17408 Query 181477 TTGAGCTGCAGCTTGGCG 181494 ||||||||||||||| || Sbjct 17409 TTGAGCTGCAGCTTGCCG 17426 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 181851 GGGGTGATTTAAGTTGAGCTTGATCTTGTTGGAAGACGAACCAACCGACTCATCACCAGT 181910 |||||| || ||||| || ||||||||||| | || ||||| | || || Sbjct 17537 GGGGTGGTTGAAGTTCAGGCGGATCTTGTTGGCGTTCTGGGAGACGGACTCGCCGCCGGT 17596 Query 181911 GAACTGAAGCTGCTCAATCAGGTACTCGTGGGGGTTCTGCGCCATGCGGCGACGCTCATC 181970 |||||| |||||||| |||||||||||||||| | ||| || | | ||| ||||| || Sbjct 17597 GAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCTGGGCGAACCTGCGGCGCTCGTC 17656 Query 181971 GGTGTCAAGGAAAATGTAGTCAACGAACAG 182000 |||||| ||| | | |||||| || |||| Sbjct 17657 GGTGTCCAGGTAGACGTAGTCCACCCACAG 17686 >seq2 Length=534433 Score = 98.7 bits (108), Expect = 3e-15 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 155583 AGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATC 155642 ||| |||| || |||| ||| ||||| || ||||| | | |||| || |||||| Sbjct 280809 AGAGCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACAATC 280750 Query 155643 TCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTA 155702 ||| ||| || || | |||||||||||| | ||||| ||| || || || ||||| Sbjct 280749 TCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTGTTG 280690 Query 155703 CAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 || | |||||||| || ||||||||| | |||||||| | ||| Sbjct 280689 CAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTG 280646 >seq106 Length=3132237 Score = 89.7 bits (98), Expect = 2e-12 Identities = 103/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 302702 AGGAGCTCTCAACGAAACCACGCGCCTC-GGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 ||||| |||| || || || || | ||| |||| || |||| |||||| ||||| ||| Sbjct 1087975 AGGAGTTCTCGACAAAGCCGCGGGACTCAGGGCCAAG-GTCGTCCTTGGTGAAGTGGGGC 1087917 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGG 302820 ||||| | | || ||||| | ||||| ||||| || || ||||||||||| |||| | Sbjct 1087916 AGGGTGCGGCGCTGGAAGCCGAAGGGGATCCGCTTGCCCTCCACGTTCTGCTGCCCCACG 1087857 Query 302821 CACGAAATCATCTGCG 302836 || | |||||||||| Sbjct 1087856 CAGGCTATCATCTGCG 1087841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815601087722