Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq18 863 0.0 seq17 522 3e-143 >seq18 Length=145863 Score = 863 bits (956), Expect = 0.0 Identities = 786/986 (80%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || ||||| || | ||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 ||||| |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 |||||| |||||||| ||||| || | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 157879 ATTTCACTTCCTCATTGGTATCTA-TGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 || ||||||| || | || || | ||| |||||||| ||||||||||||||||| | || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 ||||||| ||||| || |||||| |||||| || ||||| ||||| || || || ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||||||| || |||| ||| ||||||||||||| ||||| |||| ||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 | || || ||||| |||| |||| |||| |||||||| || ||||||||||||||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | ||||| ||||| ||||||||||| || |||||||| || |||||||| |||||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158237 | ||| || ||||| ||||| | |||||||| ||||| | || ||| ||| | Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 158238 GTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCG 158297 ||||||| ||||||||||| ||||| || || ||||| || || ||||| || ||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 158298 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158357 ||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||||||| Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 158358 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCA 158417 |||| |||||||| || || |||||||| || || ||||| |||| || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 158418 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158477 |||| ||||| ||||||||||||||||| | | || ||| ||||| || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 158478 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158537 | |||| || | | ||||| || |||||||||||||| ||||| || | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 158538 CACACAACTTCCCACTCGACCTTGCT 158563 |||||||||||||||| ||||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 522 bits (578), Expect = 3e-143 Identities = 731/1015 (72%), Gaps = 18/1015 (2%) Strand=Plus/Minus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | || || || ||||| || || || |||||||| || |||| ||| Sbjct 87615 GATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACT-CTT 87557 Query 159366 CCC-ACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTG 159424 ||| || ||||| || || | || || ||| | || || || | || ||||| ||| Sbjct 87556 CCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCTTG 87497 Query 159425 GTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTG 159483 |||||| || || ||||| ||||| || | || || ||| ||||| | |||||||| | Sbjct 87496 GTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTTCTTAACAGCAGCCG 87438 Query 159484 TCTCGACGCCTGCTGACGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAGTC 159541 | || || || || || |||||||| || | || ||| || ||||| |||||| | Sbjct 87437 TTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAGGC 87380 Query 159542 TCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCC 159600 || || || ||| | || ||||| || | || || | ||| ||| || || | | Sbjct 87379 ACAAGGTGACTTTACT-CGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTCGTAGCTTTAC 87321 Query 159601 ACGGTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTG 159660 | |||||||| || || ||||| || ||||| || ||||||||||| ||| | || | Sbjct 87320 ATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAG----ATCG 87265 Query 159661 GTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGC 159716 ||| | ||||||||||| |||||||| ||||| | ||||||||||| || || Sbjct 87264 GTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTATCA 87205 Query 159717 GTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 159776 |||||||| ||||| || ||||| || || | ||||| || || || |||||| || Sbjct 87204 GTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTGTA 87145 Query 159777 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCC 159836 || |||||||| |||| | | ||| | ||||| || |||||||||||| | || || Sbjct 87144 GCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACCCT 87085 Query 159837 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGC 159896 ||||| |||||||| || || ||| | ||||||| ||||| || |||| || || || Sbjct 87084 TTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACGGA 87025 Query 159897 GTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTT 159956 | || ||||||||||| || | ||||||||| || || || || || || || Sbjct 87024 GCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTCCGTGCATTC 86965 Query 159957 GATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAG 160016 | |||| |||| || ||||| ||||||||||| || || ||||| || ||||| || Sbjct 86964 AACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCACAA 86905 Query 160017 ATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCT 160076 ||||| ||| | || || || ||||| || |||||||||||||| ||| | ||||| ||| Sbjct 86904 ATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCCCT 86845 Query 160077 GTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCT 160136 || | |||||||||| | ||||| |||| || ||||||||||| | || || Sbjct 86844 GTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTACGAGCA 86785 Query 160137 TACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTAC 160196 || || || || ||||||||| | ||||| || || || ||||| ||||| |||||| Sbjct 86784 TATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTTTCTAC 86725 Query 160197 ACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCC 160256 || |||||||| || | |||||||| | | |||||| |||| || || || || Sbjct 86724 ACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACCAGCCA 86665 Query 160257 CATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 |||||||| || | |||||||| || || || || | || ||||| ||||||| Sbjct 86664 CATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCTTTAAT 86610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548373673403920