Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq18 870 0.0 seq17 547 7e-151 seq93 104 3e-17 >seq18 Length=145863 Score = 870 bits (964), Expect = 0.0 Identities = 786/986 (80%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||||| |||||||| ||| | ||||| || || | |||||||| ||||| || Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 150898 GATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATCGCTGCTCC 150957 ||||| || ||||| || | ||||| | ||||| | ||||| | ||||| || Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 150958 CCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAA 151017 ||||| ||||||||||| |||||||| || || | |||||||| | ||||||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 151018 CATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCAT 151077 |||||| |||||||||||||||||| | || ||||| || |||||||||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 151078 CTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 151137 |||||||| || || || || |||||||| |||||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 151138 CTTCCACTTCCTGATTGGTATCTA-TGCTTACATGGGTCGTGAGTGGGAACTGTCTTACC 151196 | |||||| | | || || | |||| |||||||||||||||||||||| |||| || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 151197 GCTTGGGTATGCGTCCCTGGATCTGCGTTGCATACTCTGCTCCAGTTGCTGCTGCGAGTG 151256 | || || |||||||| |||||| || || |||||||| |||||||| ||||| | || Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 151257 CAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGGTA 151316 | || ||| || |||| ||| ||||||||||||| ||||| |||| ||||| |||||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 151317 TTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCACC 151376 |||| || || ||||||| |||| |||| |||||||| ||||||||||| || ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 151377 CCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCACG 151436 | ||||| ||||||||||| |||||||| |||||||| || || ||||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 151437 GTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTATG 151496 ||||||| || |||||||| || | ||||| || || || ||||| || ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 151497 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTTTG 151556 ||||||| ||||||||||||||||| || |||||||| ||||| |||||||||||||||| Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 151557 GTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCG 151616 ||||||| ||||||||||||||||| |||||||| || ||||| || ||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 151617 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGGCATTCA 151676 | || |||||||| || ||||||||||| ||||| |||||| || || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 151677 ACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 151736 |||| ||||| ||||||||||||||||| | | || ||| || || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 151737 CCTGGGCAGACGTTCTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 151796 | |||| ||| | | |||||||| || ||||||||||| |||||||| | || | Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 151797 CTCACAACTTCCCTCTCGACCTTGCT 151822 | ||||||||||| || ||||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 547 bits (606), Expect = 7e-151 Identities = 738/1022 (72%), Gaps = 12/1022 (1%) Strand=Plus/Minus Query 152356 TGGTTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCT 152415 |||||||||| | ||||||||| | | || || || || || ||||| |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 152416 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACT 152475 || || | || || || || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 152476 TTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTT 152535 |||| || |||||| || || || | |||||||| || | || || ||||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 152536 CTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGG 152595 | || || || ||||| ||||||||| | |||||||| || | || | || ||| Sbjct 87450 TTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATGG 87391 Query 152596 GGTCCTGAGGCTCAAGGGGA-TTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTT 152654 || |||||||| ||||| || ||| || | ||| |||| | || || || |||||||| Sbjct 87390 GGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGCTTT 87332 Query 152655 TGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGC 152714 || || | || || || || || || || || || ||||| || ||||||||||| || Sbjct 87331 CGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGC 87272 Query 152715 ACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTG 152770 | | ||||||| | ||||| ||||| |||||||| ||||| | ||||| |||| Sbjct 87271 AAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTG 87216 Query 152771 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC-A 152829 | || || ||||| || ||||| ||| |||| ||||| | ||||| || || || | Sbjct 87215 TCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTA 87156 Query 152830 TCTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGG 152889 |||| || || || |||||||||||||| |||| ||| | ||||| |||||||||||| Sbjct 87155 GCTTT-GGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGG 87097 Query 152890 ACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCT 152949 || | || || || || ||||||||||| |||||| || | || | || | || | | Sbjct 87096 ACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGT 87037 Query 152950 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACT 153009 || ||||| || | ||||||||||| ||| | | | |||||||||| || |||||| Sbjct 87036 GCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACT 86977 Query 153010 TTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGT 153069 ||| || ||| || || |||| |||||||| || || ||||| || ||||||||| Sbjct 86976 TTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGT 86917 Query 153070 TTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATG 153129 || ||||| || || ||||| | ||||| || ||||| |||||||||||||||||| Sbjct 86916 TTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATG 86857 Query 153130 CTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTC 153189 || ||||| ||||| | |||||||||| | | ||||| | || || |||||||| Sbjct 86856 CTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTT 86797 Query 153190 AATCTTCGTGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTT 153249 || | || || || || ||||| || ||||| ||| | || | || || |||||||| Sbjct 86796 AACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTC 86737 Query 153250 GAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCT 153309 ||||| ||||| || || || || ||| | ||||||||| || | || ||| |||| || Sbjct 86736 GAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCT 86677 Query 153310 GTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCT 153369 ||||| || ||||| || | || ||||| || ||||| || ||||| || |||||| Sbjct 86676 CAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 86617 Query 153370 CT 153371 || Sbjct 86616 CT 86615 >seq93 Length=1853137 Score = 104 bits (114), Expect = 3e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 151999 ACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTG 152058 ||||||||||| | ||||| || || || ||| |||| | ||||| || || | Sbjct 202348 ACCAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCG 202289 Query 152059 CTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACC 152118 ||||||| || || || || || || ||| | ||||| || || || ||| |||| Sbjct 202288 CTGGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACC 202229 Query 152119 AATCATTCTTGGATGATGACCAGATTGAATCA-GGATTCGTGCTGACCTGTGTTGCATAT 152177 | || ||||||||||| |||||| ||| | || ||||| || ||||| || ||||| Sbjct 202228 AGTCTTTCTTGGATGAGGACCAG-CAGAAGAACGGTTTCGTCCTTACCTGCGTCGCATAC 202170 Query 152178 CCAACTTCTGATGTCACCCTCATGACTGAACAAGAGGAGTCGCTCTACTGA 152228 || || || || ||||| || ||| | || |||||| | || |||||| Sbjct 202169 CCCACCTCCGACCTCACCATCGAGACCCACCAGGAGGAGGCCCTGTACTGA 202119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549621671750320