Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq18 715 0.0 seq17 508 7e-139 >seq18 Length=145863 Score = 715 bits (792), Expect = 0.0 Identities = 757/991 (76%), Gaps = 10/991 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||||| ||||| || |||||| || ||| | ||| |||||||||||||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| |||| ||||||| || || |||||| | ||||| | ||||| ||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || || ||||| || ||| | || || || | |||||| | | || ||||||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 ||||| ||||||||||| ||||| | ||||||||||| || | |||||||| || || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | ||||| ||| | || ||||| ||||||||||| || | | Sbjct 120391 TGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTA 120332 Query 72535 TTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 72593 | |||||| | | || || | |||| ||||||||| | |||||||||| || | | | Sbjct 120331 TGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 72594 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 72653 |||||||| | || ||||| |||||| ||||| ||||| || | || || ||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 72654 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 72713 |||||| | | || || ||||||| ||||||||||| ||||||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 72714 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 72773 ||||| || |||||||||||| | || |||||||| || |||||||| || |||||||| Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 72774 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 72833 ||||| ||| ||||| || ||| ||||||||||| || ||| || |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 72834 TTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCA--AAACTAC 72891 ||| || || ||||| || || ||| | || || || |||||||| ||| |||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAA--TCAGCAAACGCT 119975 Query 72892 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 72951 || || || ||||| |||||||||||||| || |||||||||||||| || || ||||| Sbjct 119974 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTT 119915 Query 72952 GGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTC 73011 ||| | |||||||||| || || ||||||||||||||||||||| | ||||||||||| Sbjct 119914 GGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTT 119855 Query 73012 GCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTC 73071 |||| | |||||||| || | ||||| || | | ||||||| ||| ||||||||| Sbjct 119854 GCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTC 119795 Query 73072 AACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCA 73131 |||||||||||||||||||||||||| ||||||||||| | | || | || || Sbjct 119794 AACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGT--TATCA 119737 Query 73132 ACA--TGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAA 73189 ||| ||||| || | | ||| | || |||||||| |||||||| ||||| ||||||| Sbjct 119736 ACACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAA 119677 Query 73190 ATGCACACAACTTCCCACTAGACCTAGCATC 73220 | ||||||||||||||||||||||| || || Sbjct 119676 ACGCACACAACTTCCCACTAGACCTTGCTTC 119646 >seq17 Length=88650 Score = 508 bits (562), Expect = 7e-139 Identities = 738/1042 (71%), Gaps = 23/1042 (2%) Strand=Plus/Minus Query 73361 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 73420 |||||||| | | ||||| ||||| | || || || || ||| | || |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 73421 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 73480 ||||| ||||| || ||| |||||||| ||| | || || ||||| |||||| || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 73481 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTT 73540 ||||| || || |||||||||||||| ||||| || || | || ||| || || Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 73541 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGG 73600 ||||| ||||| || ||||| || | | |||||||| | |||||||| ||| Sbjct 87450 TTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATGG 87391 Query 73601 GGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 73660 || || ||||||||||| || || || |||| ||| || ||||| || ||| || Sbjct 87390 GGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTC 87331 Query 73661 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 73720 ||||| |||||||| | ||||| || || || || ||||| |||||||||| ||||| Sbjct 87330 GTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCA 87271 Query 73721 GGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTC 73780 || || | | |||||||||||||| | || || |||||| ||| || || ||| Sbjct 87270 AGATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTC 87211 Query 73781 ACGAGCA-TCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATT 73839 | || |||| || || |||||||| ||||| | |||||||| || ||| || Sbjct 87210 GT-ATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTT 87152 Query 73840 CGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCT 73899 ||||| || |||||||| || | |||| | ||| | || ||||||||||| || || Sbjct 87151 TGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCT 87092 Query 73900 TAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCAT 73959 ||| || || || ||||||||||| |||||| | || |||| ||| | |||||||| || Sbjct 87091 TAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAAT 87032 Query 73960 ACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAA 74019 || || ||||||||| ||||||| | | ||||| | ||| ||| Sbjct 87031 TCACGGAGCAACAGTAGAGAACACTCTTTTTGAAG------------ATGGTGACGGTGC 86984 Query 74020 GATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTAT 74079 || || |||||| | |||||| | || || || | |||||||| || ||| Sbjct 86983 GA--------AC-ACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTAT 86933 Query 74080 GATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATT 74139 | | || |||||| | || |||||||| || |||||| |||| || ||||||||| | | Sbjct 86932 GGTAACAGCTAACCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTG 86873 Query 74140 CTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTAT 74199 | || ||| ||||| | || || ||||| | ||| | |||| | || ||| | Sbjct 86872 GCTTCATTTCTTTATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGT 86813 Query 74200 CGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGC 74259 | || || || |||||| | ||||||| |||||||| || |||||||| | ||||| Sbjct 86812 TATCGGACTTGCTCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGC 86753 Query 74260 AGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAG 74319 || ||||| || || || || |||||||| || ||||||||||| || |||||||| || Sbjct 86752 TGAGGACCCTGAATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAG 86693 Query 74320 AGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTT 74379 |||||||||| | || || || || ||||| || |||| |||||||| || || || Sbjct 86692 AGCATGGATGGCGGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTT 86633 Query 74380 GCCACGAGGCAACGCACTATAA 74401 ||||| || ||||| || ||| Sbjct 86632 ACCACGTGGAAACGCTCTTTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572872840942480