Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq102 159 4e-33 seq106 145 9e-29 seq57 98.7 1e-14 seq2 95.1 1e-13 seq4 93.3 5e-13 seq20 87.8 2e-11 seq104 86.0 8e-11 seq89 86.0 8e-11 >seq102 Length=2901463 Score = 159 bits (176), Expect = 4e-33 Identities = 150/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 868742 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCG 868801 || |||| | ||||||||| ||| |||||||| || ||||||||||| | || Sbjct 1634306 AGAGAGAGGAGCTCCATCCAGTCGAAGGGGTTGGGGGTGCCATAGTGCTTTTCTGAGCCC 1634247 Query 868802 AGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTC 868861 || | | |||||||||||||| ||||| ||||||||||||| ||||||| | |||| Sbjct 1634246 AGGGCGACCAGCAGGCGGTCGGCCACAAAGTCGATGTACTGGCTCATGAGGTCCTTGTTC 1634187 Query 868862 ATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCC 868921 |||||||| || |||| ||||||| ||||| || |||||| |||||||| || || ||| Sbjct 1634186 ATGCCGATCAGGCCCACGGGCAGCGCCTCGCACAGAAACTCCTTCTCGATGTCAACCGCC 1634127 Query 868922 TCGACGATGAT 868932 |||| |||||| Sbjct 1634126 TCGATGATGAT 1634116 Score = 111 bits (122), Expect = 2e-18 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||| ||||||||||||||||| Sbjct 1633763 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGTGCATGAGGCCGCGCTTC 1633704 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||| | |||||| ||||| ||| ||||||||||| ||| ||| | Sbjct 1633703 TTGAGCCAGAAGACGCTGCAGAAGCTGCCGCTGAAGAAGATGCCCTCCACGCAGGCCCAC 1633644 Query 869300 CCGATGAGCCGCTCGGCAAAG 869320 | | |||||||| |||||| Sbjct 1633643 GCCACCAGCCGCTCCGCAAAG 1633623 >seq106 Length=3132237 Score = 145 bits (160), Expect = 9e-29 Identities = 159/206 (77%), Gaps = 9/206 (4%) Strand=Plus/Plus Query 868737 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGC 868796 ||| ||||||||||| ||||||||| ||| ||||||||||| ||||| | |||| Sbjct 1547319 CCTGGAGCGAGATCATCTCCATCCAGTCGAAGGGGTTGGGCGTGTTGTACAGGCGCTCGC 1547378 Query 868797 ATCCGAGCGACGCGAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGG 868856 | |||| | | |||||||||||||| || ||||||||||||| | ||||||||| | Sbjct 1547379 ACTGGAGCTCCACCAGCAGGCGGTCGGCCACGTACTCGATGTACTGCCCCATGAGGCCCG 1547438 Query 868857 CGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCT-CA-CA-AACTCTTTCTCGATCT 868913 |||||||||| | |||| ||||||||||| |||| || || ||||| | ||| | || Sbjct 1547439 CGTTCATGCCCACCAGCGACACCGGCAGCG---CGCTGCAGCAGAACTCGTGCTCCAGCT 1547495 Query 868914 CGACGGCCTCG---ACGATGATCTGC 868936 | || |||||| |||||| | ||| Sbjct 1547496 CCACCGCCTCGCGCACGATGTTGTGC 1547521 Score = 102 bits (112), Expect = 1e-15 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 512039 GAGATCAAGGCCGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTG 512098 |||||| || || ||| ||||||||| | ||||||||| |||||||| | ||| | Sbjct 1092801 GAGATCCGCGCTGTGATCGAGTTTGACGGCTCGTACGTCAACTACCGCCACCTGGCGGCG 1092860 Query 512099 GCCACCGACACCATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAAC 512158 |||| ||||| | ||||| | ||||| |||| ||||||||| ||||| Sbjct 1092861 CTGTGCGACTCCATGACGTCGCGCGGCCACTTCATGGCCATCACCCGCCACGGCATCAAC 1092920 Query 512159 CGCGCCGACCACGGCTTCCTGTCGCGGGCCTCTTTCGAAGAGACCGTCGACATCCTCTT 512217 ||| ||| ||||| |||| ||| | ||| ||||| ||||||||||||||||| || Sbjct 1092921 CGCAACGAGAACGGCCCCCTGGCGCAGTGCTCCTTCGAGGAGACCGTCGACATCCTGTT 1092979 Score = 98.7 bits (108), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| ||||||||||||||| ||||||| Sbjct 1547909 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAGGCGCTTC 1547968 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 |||||||| |||||||||||||| ||| ||| ||||||||| ||| ||| || Sbjct 1547969 TTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCAGGCGAAC 1548028 Query 869300 CCGATGAGCCGCTCGGCAAAGGTG 869323 | | || ||||| |||||| || Sbjct 1548029 GCCACCAGGCGCTCCGCAAAGCTG 1548052 >seq57 Length=1368 Score = 98.7 bits (108), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1628448 CATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTT 1628507 ||| |||||||| ||||| ||||| ||||| ||||||||||| ||||||| | Sbjct 1198 CATGAAGAGGTCCGGTACCCACATGGCGTAGAAGAGATCGCGCGCCCGCCTCTCCTCGTC 1257 Query 1628508 GCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTA 1628567 ||||| ||||| |||||||| || |||||| | ||| |||||||| ||||| | ||| Sbjct 1258 ACCGTGATTCTTCTTGAGGTCCAGGAAGTCGAAGACGTCTGCGTGCCATGGCTCGATGTA 1317 Query 1628568 GCAGGCAAAGGCGCCCTTGCGCTTGCC 1628594 | || ||| || || |||||||| Sbjct 1318 GATTGCGAAGCTCCCATTTCGCTTGCC 1344 >seq2 Length=534433 Score = 95.1 bits (104), Expect = 1e-13 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1628499 CTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGG 1628558 ||||||||| || || ||||| |||||| |||||||| | |||||| || ||||| || Sbjct 280244 CTCCTCCTTTCCATGATTCTTACGGAGGTCTAGCCAGTCAAAAATGTCAGCATGCCAAGG 280185 Query 1628559 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 ||| ||||| |||||| || ||||||||||| || ||||| Sbjct 280184 CTCAAGGTATATGGCAAAAGCACCCTTGCGCTTTCCTCCGCC 280143 >seq4 Length=1187754 Score = 93.3 bits (102), Expect = 5e-13 Identities = 91/115 (79%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 732342 ACGCACGTCGAGGTGCACCCGCTGC-TCATGCTCGGGGCCTGCGCGTCCATCATCCCGTT 732400 || ||| |||| | ||||| || | | || || || | |||||| ||||||||||| || Sbjct 989209 ACCCACTGCGAGATCCACCC-CTCCATGATCCTGGGCGTCTGCGCCTCCATCATCCCCTT 989151 Query 732401 CTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 | | ||||||||||| | || ||||||| ||||||| | ||||||||||||||| Sbjct 989150 CCCGGACCACAACCAGTCCCCCCGCAACACCTACCAGTCCGCCATGGGCAAGCAG 989096 >seq20 Length=132363 Score = 87.8 bits (96), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 |||||| |||||| |||||| |||||| ||| |||||||||||||||||||| Sbjct 119640 GAGGCCCTTCATGAGATTGCGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAA 119581 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 | || |||||| ||| ||| |||| || || |||| ||| || ||| ||| | | Sbjct 119580 CATGACGCCCTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGTG--GAGTCGC-G 119524 Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | | |||||||||| |||||| ||||||| ||| Sbjct 119523 GTCGGCGATCCACTTCTGCGCCCACGCGGCCTTCTTC 119487 Score = 87.8 bits (96), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 869215 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAA 869274 |||||| |||||| |||||| |||||| ||| |||||||||||||||||||| Sbjct 121552 GAGGCCCTTCATGAGATTGCGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAA 121493 Query 869275 AAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTC 869334 | || |||||| ||| ||| |||| || || |||| ||| || ||| ||| | | Sbjct 121492 CATGACGCCCTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGTG--GAGTCGC-G 121436 Query 869335 CTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 | | |||||||||| |||||| ||||||| ||| Sbjct 121435 GTCGGCGATCCACTTCTGCGCCCACGCGGCCTTCTTC 121399 >seq104 Length=3762872 Score = 86.0 bits (94), Expect = 8e-11 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 19583 GCCTTTAAGCCGCCGGCCACGATCGGCTCCGCGCAGCAGACGTGCGAATACGGCGG-CGA 19641 ||||| |||||| || ||||||| | | |||| | ||| | || ||||| ||| Sbjct 980816 GCCTTCAAGCCGACGTCCACGATAGCACGCAAGCAGAACACG-GTGAGCCGGGCGGGCGA 980758 Query 19642 GCAGGCCACGTTGGAGGCGCGCGGGAGGCACGACCCGTGCGTCGTCGCGCGCGCGGTCCC 19701 | || | ||| |||||| || | |||||||| |||||||| | ||||| || || Sbjct 980757 GTCGGTGGAGCTGGTGGCGCGGGGCCGCCACGACCCCTGCGTCGTGCCCCGCGCTGTGCC 980698 Query 19702 CATCGTCGAGGCCATGGCGGCCATGGTCCTCGCCGA 19737 ||| |||||||||||||| ||| | ||||| ||||| Sbjct 980697 CATGGTCGAGGCCATGGCTGCCCTCGTCCTGGCCGA 980662 >seq89 Length=1719426 Score = 86.0 bits (94), Expect = 8e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 507737 TACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCG 507796 ||||| |||||||| ||||||||||||||||||||||||||||| ||| | ||| ||| Sbjct 316515 TACAATGCCGACTTCGACGGCGACGAGATGAACCTGCACGTGCCACAGACGGAGGAGGCC 316456 Query 507797 CGCGCCGAGG 507806 || ||||||| Sbjct 316455 CGGGCCGAGG 316446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130501143602