Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq106 107 2e-18 seq100 104 2e-17 >seq106 Length=3132237 Score = 107 bits (118), Expect = 2e-18 Identities = 155/218 (71%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || ||||| || || || || | ||||| | || | || Sbjct 2288270 ACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288211 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || || || || || || || || || ||||||||||| Sbjct 2288210 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288151 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | | || |||| || ||||| || ||||| || || Sbjct 2288150 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCCACC 2288091 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 || ||| ||||| |||| |||| || ||| |||||| Sbjct 2288090 CTCCACCTGGTGCTGCGCCTGCGTGGTGGC--AACTGA 2288055 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || ||||| || || || || | ||||| | || | || Sbjct 2288723 ACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288664 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || || || || || || || || || ||||||||||| Sbjct 2288663 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288604 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | | || | || || ||||| || ||||| || || Sbjct 2288603 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACC 2288544 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| ||||| |||| |||| || ||| Sbjct 2288543 CTCCACCTGGTGCTGCGCCTGCGTGGTGGC 2288514 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || || || || || || | | ||||| | |||| || Sbjct 2289122 ACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATGTC 2289063 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || || || || || || || || || | ||||| ||| Sbjct 2289062 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCGCC 2289003 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | | || | || || ||||| || ||||| || || Sbjct 2289002 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTACC 2288943 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| ||||| |||| |||| || ||| Sbjct 2288942 CTCCACCTGGTGCTGCGCCTGCGTGGTGGC 2288913 >seq100 Length=2336451 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || || || || || || || | ||||| | || | || Sbjct 980610 ACCCTGACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 980669 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || || || ||||| || || || ||| ||||||||||| Sbjct 980670 AAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCC 980729 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | || | || || ||||| || ||||| || || Sbjct 980730 GGCAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCCACC 980789 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| ||||| |||| |||| |||||| Sbjct 980790 CTCCACCTGGTGCTGCGCCTGCGTGGAGGC 980819 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || || || || || || || | ||||| | || | || Sbjct 981419 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAATGTG 981478 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || ||||| ||||| || || || || ||||||||||| Sbjct 981479 AAGAGCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTTTGCC 981538 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | || | || || ||||| || ||||| || || Sbjct 981539 GGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 981598 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| ||||| |||| |||| || ||| Sbjct 981599 CTCCACCTGGTGCTGCGTCTGCGTGGTGGC 981628 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || || || || || || || | ||||| | || | || Sbjct 981012 ACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 981071 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || || || ||||| || || || || ||||||||||| Sbjct 981072 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATCTTTGCC 981131 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || |||||||||||| | | || | || || ||||| || ||||| || || Sbjct 981132 GGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 981191 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || ||| ||||| |||| |||| || ||| Sbjct 981192 CTCCACCTGGTGCTGCGTCTGCGTGGTGGC 981221 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24722 ACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTA 24781 || || || || || || || || || || || || || | ||||| | || | || Sbjct 981825 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 981884 Query 24782 AAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCC 24841 || |||||||| ||||| || ||||| || || || || || || ||||||||||| Sbjct 981885 AAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 981944 Query 24842 GGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACA 24901 || || ||||||||||| | | || | || || ||||| || ||||| || || Sbjct 981945 GGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 982004 Query 24902 CTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || ||| ||||| |||| |||| || || Sbjct 982005 CTCCACCTGGTGCTGCGCCTGCGTGGTGG 982033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897003885680