Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq102 147 3e-29 seq106 125 1e-22 seq94 118 2e-20 seq91 118 2e-20 seq4 107 3e-17 seq105 104 4e-16 seq57 104 4e-16 seq89 95.1 2e-13 seq88 87.8 3e-11 seq20 87.8 3e-11 >seq102 Length=2901463 Score = 147 bits (162), Expect = 3e-29 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 793950 AGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCG 794009 || |||| | ||||||||| ||| ||||||| || |||||||| || | || Sbjct 1634306 AGAGAGAGGAGCTCCATCCAGTCGAAGGGGTTGGGGGTGCCATAGTGCTTTTCTGAGCCC 1634247 Query 794010 AGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTC 794069 || | | |||||||||||||| || || || |||||||||| ||||||| | |||| Sbjct 1634246 AGGGCGACCAGCAGGCGGTCGGCCACAAAGTCGATGTACTGGCTCATGAGGTCCTTGTTC 1634187 Query 794070 ATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCC 794129 |||||||| || |||||||||||| ||||| | |||||| |||||||| || || ||| Sbjct 1634186 ATGCCGATCAGGCCCACGGGCAGCGCCTCGCACAGAAACTCCTTCTCGATGTCAACCGCC 1634127 Query 794130 TCGATGATGAT 794140 ||||||||||| Sbjct 1634126 TCGATGATGAT 1634116 Score = 109 bits (120), Expect = 9e-18 Identities = 167/237 (70%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| || ||| | | Sbjct 2681814 TGAACTTGGTCACAGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTCTCCGGGGA 2681873 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || | |||||| |||||||||||||| | | ||| |||||| || Sbjct 2681874 GGATTAGCCTCACGGCTGTCTGGATCTCGCGAGAAGTCACAGTGGGCTTCTTGTTGTAGC 2681933 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | | | ||||||| |||| |||| ||||| ||| || ||||||| Sbjct 2681934 GGGCCAGCTGTGCAGTCTCGGTGGCGATCTTCTCGAAGATGTCAGTGATGAAGGAGTTCA 2681993 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCT 1485706 ||| || || | | |||| || || ||| |||||||||||| ||||||| Sbjct 2681994 GGATGGAGATGGCACGGCTGGAAATTCCAGTGTCAGGGTGCACCTGC-GAAGCACCT 2682049 Score = 104 bits (114), Expect = 4e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||| ||||||||||||||||| Sbjct 1633763 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGTGCATGAGGCCGCGCTTC 1633704 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||| | ||||| ||||| ||| ||||||||||| ||| ||| | Sbjct 1633703 TTGAGCCAGAAGACGCTGCAGAAGCTGCCGCTGAAGAAGATGCCCTCCACGCAGGCCCAC 1633644 Query 794461 CCGACGAGCCGCTCGGCAAA 794480 | || |||||||| ||||| Sbjct 1633643 GCCACCAGCCGCTCCGCAAA 1633624 >seq106 Length=3132237 Score = 125 bits (138), Expect = 1e-22 Identities = 144/191 (75%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 793945 CCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGC 794004 ||| ||||||||||| ||||||||| ||| ||||||| ||| ||| | ||||| Sbjct 1547319 CCTGGAGCGAGATCATCTCCATCCAGTCGAAGGGGTTGGGCGTGTTGTACAGGCGCTCGC 1547378 Query 794005 ACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGG 794064 || |||| | | |||||||||||||| ||| | || |||||||| | ||||||| | | Sbjct 1547379 ACTGGAGCTCCACCAGCAGGCGGTCGGCCACGTACTCGATGTACTGCCCCATGAGGCCCG 1547438 Query 794065 CGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTG--ACA-AACTCTTTCTCGATCT 794121 |||||||||| | |||| ||| ||||||| ||||| || ||||| | ||| | || Sbjct 1547439 CGTTCATGCCCACCAGCGACACCGGCAGCG---CGCTGCAGCAGAACTCGTGCTCCAGCT 1547495 Query 794122 CGACGGCCTCG 794132 | || |||||| Sbjct 1547496 CCACCGCCTCG 1547506 Score = 98.7 bits (108), Expect = 2e-14 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 434115 GAGATCAAGGCCGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTG 434174 |||||| || |||||| ||||||||| | ||||||||| |||||||| | ||| | Sbjct 1092801 GAGATCCGCGCTGTGATCGAGTTTGACGGCTCGTACGTCAACTACCGCCACCTGGCGGCG 1092860 Query 434175 GCCACCGACACCATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAAC 434234 |||| ||||| | |||||| | ||||| |||| || |||||| ||||| Sbjct 1092861 CTGTGCGACTCCATGACGTCGCGCGGCCACTTCATGGCCATCACCCGCCACGGCATCAAC 1092920 Query 434235 CGGGCCGACCACGGCTTTCTGTCGCGGGCCTCCTTTGAGGAGACTGTCGACATCCTCTT 434293 || ||| ||||| ||| ||| | |||||| |||||||| ||||||||||| || Sbjct 1092921 CGCAACGAGAACGGCCCCCTGGCGCAGTGCTCCTTCGAGGAGACCGTCGACATCCTGTT 1092979 Score = 96.9 bits (106), Expect = 5e-14 Identities = 153/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||| ||| ||||||||||||||| ||||||| Sbjct 1547909 CCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAGGCGCTTC 1547968 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 |||||||| |||||||| ||||| ||| ||| ||||||||| ||| ||| || Sbjct 1547969 TTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCAGGCGAAC 1548028 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 | || || ||||| ||||| || | ||| | || |||||| | | ||||||| Sbjct 1548029 GCCACCAGGCGCTCCGCAAAGCTG--CTGGCGC----TGCCGATCCAGTGCTGCGCCCAC 1548082 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | ||||| || ||| | |||| ||| | | |||| Sbjct 1548083 TGCGCCTTCTTGGCCACGCATGGCAGCGTCTGGGTGGC 1548120 >seq94 Length=1310662 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||||||||||||||| ||||| || || |||||| ||||||| || Sbjct 1289881 GGCAGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTC 1289940 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT 1485581 ||| | | ||| || | ||| ||||||||||||||||| | | | ||| ||| Sbjct 1289941 TCCGGGGAGGATGAGCCTCACAGCGGTCTGGATCTCGCGAGAGGTCACAGTGGGCTTCTT 1290000 Query 1485582 GTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||| ||| ||||| | | | ||| ||| |||| |||| ||||| ||| || Sbjct 1290001 GTTGTAGCGGGCCAGCTGAGCAGTCTCAGTGGCGATCTTCTCGAAGATGTCCGTGATGAA 1290060 Query 1485642 CGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||||| ||| || || | | |||| || || ||| |||||||||||| Sbjct 1290061 GGAGTTCAGGATGGAGATGGCACGGCTGGAAATTCCAGTGTCAGGGTGCACCTGC 1290115 >seq91 Length=742804 Score = 118 bits (130), Expect = 2e-20 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 1485462 GGCATCGTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTC 1485521 |||| | || ||||||||||||||||||| ||||| || || |||||| ||||||| || Sbjct 25684 GGCAGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTC 25625 Query 1485522 GCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTT 1485581 ||| | | ||| || | ||| ||||||||||||||||| | | | ||| ||| Sbjct 25624 TCCGGGGAGGATGAGCCTCACAGCGGTCTGGATCTCGCGAGAGGTCACAGTGGGCTTCTT 25565 Query 1485582 GTTAGTGCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAA 1485641 ||| ||| ||||| | | | ||| ||| |||| |||| ||||| ||| || Sbjct 25564 GTTGTAGCGGGCCAGCTGAGCAGTCTCAGTGGCGATCTTCTCGAAGATGTCCGTGATGAA 25505 Query 1485642 CGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||||| ||| || || | | |||| || || ||| |||||||||||| Sbjct 25504 GGAGTTCAGGATGGAGATGGCACGGCTGGAAATTCCAGTGTCAGGGTGCACCTGC 25450 >seq4 Length=1187754 Score = 107 bits (118), Expect = 3e-17 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||||||||| |||||||| ||||| || || |||||| ||||||| || ||| | | Sbjct 947110 TGAACTTGGTGACAGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTCTCCGGGAA 947051 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 ||| || | ||| || |||||||||||||| | | | ||| |||||| || Sbjct 947050 GGATGAGCCTCACAGCTGTCTGGATCTCGCGAGAGGTCACAGTGGGCTTCTTGTTGTAGC 946991 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | ||| ||| ||| |||| |||| ||||| ||| || ||||| | Sbjct 946990 GAGCCAGCTGCGCGGTCTCTGTGGCGATCTTCTCGAAGATGTCCGTGATGAAGGAGTTTA 946931 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||| || || | | |||| || || ||| |||||||||||| Sbjct 946930 GGATGGAGATAGCACGGCTGGAAATTCCAGTGTCAGGGTGCACCTGC 946884 Score = 102 bits (112), Expect = 1e-15 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 652886 ACGCACGTCGAGGTGCACCCGCTGC-TCATGCTGGGCGCCTGCGCTTCCATCATCCCCTT 652944 || ||| |||| | ||||| || | | || ||||||| |||||| |||||||||||||| Sbjct 989209 ACCCACTGCGAGATCCACCC-CTCCATGATCCTGGGCGTCTGCGCCTCCATCATCCCCTT 989151 Query 652945 TTCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 652999 | ||||||||||| | || ||||||| ||||||| | ||||||||||||||| Sbjct 989150 CCCGGACCACAACCAGTCCCCCCGCAACACCTACCAGTCCGCCATGGGCAAGCAG 989096 >seq105 Length=3273802 Score = 104 bits (114), Expect = 4e-16 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || || |||||| ||||||| || ||| | | Sbjct 593225 TGAACTTGGTCACAGCCTTGGTGCCCTCAGACACAGCGTGCTTGGCCAGCTCTCCGGGGA 593166 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || | ||| || ||||||||||| || | | | ||| |||||| || Sbjct 593165 GAATGAGCCTCACAGCTGTCTGGATCTCACGAGAGGTCACTGTGGGCTTCTTGTTGTAGC 593106 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||| | ||| ||| ||| |||| |||| ||||| ||| || ||||||| Sbjct 593105 GTGCCAGCTGAGCGGTCTCAGTGGCGATCTTCTCGAAGATGTCAGTGATGAAGGAGTTCA 593046 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||| || || | | ||||||| || ||| |||||||||||| Sbjct 593045 GGATGGAGATGGCACGGCTGGAGATTCCAGTGTCAGGGTGCACCTGC 592999 >seq57 Length=1368 Score = 104 bits (114), Expect = 4e-16 Identities = 119/158 (75%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 2071851 CACGCGGCGCATAAACAGGTC--GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGG 2071908 |||||| ||| || ||||| | || ||||| | |||| ||||||||||||||||| Sbjct 1189 CACGCGCTCCATGAAGAGGTCCGGTAC--CCACATGGCGTAGAAGAGATCGCGCGCCCGC 1246 Query 2071909 TTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCAC 2071968 ||||||| | ||||| ||||| || ||||| || |||||| || ||| |||||||| Sbjct 1247 CTCTCCTCGTCACCGTGATTCTTCTTGAGGTCCAGGAAGTCGAAGACGTCTGCGTGCCAT 1306 Query 2071969 GGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCC 2072006 ||||| | |||| || ||| || || |||||||| Sbjct 1307 GGCTCGATGTAGATTGCGAAGCTCCCATTTCGCTTGCC 1344 >seq89 Length=1719426 Score = 95.1 bits (104), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 429633 ACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGACGAG 429692 || |||||| ||||| | |||| | | ||||| |||||||| |||||||||||| Sbjct 316548 ACGTTCCGGTTCAACGAGTGCGTGTGCAACCCGTACAATGCCGACTTCGACGGCGACGAG 316489 Query 429693 ATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCATGGGC 429752 ||||||||||||||||| ||| ||||| ||| || ||||| | | || | ||||||| Sbjct 316488 ATGAACCTGCACGTGCCACAGACGGAGGAGGCCCGGGCCGAGGCCTCCGAGCTCATGGGC 316429 Query 429753 GT 429754 || Sbjct 316428 GT 316427 >seq88 Length=702383 Score = 87.8 bits (96), Expect = 3e-11 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 ||||||||||| || | ||| ||||| | ||| ||||||| ||||| || |||||| Sbjct 337612 GCCCAGCAGGCGCTGAGGAGGACGATGGAGATCTACTCCAACACCACGCGCTTCGCGCTG 337671 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 ||||||||||| || | | ||||||| || ||||| || ||||||||| ||||| Sbjct 337672 GCCTGCAACACCAGCTCCAAGATCATCGAGCCCATCCAGTCGCGCTGCGCCATCGTGCGC 337731 Query 2019375 T 2019375 | Sbjct 337732 T 337732 >seq20 Length=132363 Score = 87.8 bits (96), Expect = 3e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 |||||| |||||| |||||| |||||| ||| || ||||||||||||||||| Sbjct 119640 GAGGCCCTTCATGAGATTGCGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAA 119581 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 | || |||||| ||| ||| |||| ||| || |||| ||| || ||| || | | Sbjct 119580 CATGACGCCCTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGTG--GAGTCGC-G 119524 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 | | |||||||||| ||||||| | ||||| ||| | | | || | || || | Sbjct 119523 GTCGGCGATCCACTTCTGCGCCCACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCAC 119464 Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAG 794609 ||| | | |||| |||||| | |||||| || | ||||||| | ||| Sbjct 119463 TGCGTTCAGGGCGTGGCGCTTCTCAGCGGGGTCCCGGATGAAGGTGTCCAGGAG 119410 Score = 87.8 bits (96), Expect = 3e-11 Identities = 161/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 |||||| |||||| |||||| |||||| ||| || ||||||||||||||||| Sbjct 121552 GAGGCCCTTCATGAGATTGCGCTTGCGGAGCCAGTAGAGCGCGCAGAAACTGCCCGAGAA 121493 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 | || |||||| ||| ||| |||| ||| || |||| ||| || ||| || | | Sbjct 121492 CATGACGCCCTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGTG--GAGTCGC-G 121436 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 | | |||||||||| ||||||| | ||||| ||| | | | || | || || | Sbjct 121435 GTCGGCGATCCACTTCTGCGCCCACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCAC 121376 Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAG 794609 ||| | | |||| |||||| | |||||| || | ||||||| | ||| Sbjct 121375 TGCGTTCAGGGCGTGGCGCTTCTCAGCGGGGTCCCGGATGAAGGTGTCCAGGAG 121322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916235124296534