Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq106 116 2e-21 seq100 113 3e-20 seq99 84.2 1e-11 >seq106 Length=3132237 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | ||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 2288928 CAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 2288987 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||||||||| || || ||||||||| | || | ||||||||||| Sbjct 2288988 CTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 2289047 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || ||||| | | || | ||| | ||| || |||| ||| ||||| Sbjct 2289048 CTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGT 2289107 Query 34945 CTTTCCCGTGAGGGTCT 34961 ||| || || || |||| Sbjct 2289108 CTTGCCAGTCAGAGTCT 2289124 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 2288529 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATC 2288588 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 2288589 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 2288648 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| || ||| || || | || ||||| Sbjct 2288649 CTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGT 2288708 Query 34945 CTTTCCCGTGAGGGTC 34960 ||| || ||||| ||| Sbjct 2288709 CTTGCCAGTGAGAGTC 2288724 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 2288076 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATC 2288135 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 2288136 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 2288195 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| || ||| || || | || ||||| Sbjct 2288196 CTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGT 2288255 Query 34945 CTTTCCCGTGAGGGTC 34960 ||| || || || ||| Sbjct 2288256 CTTGCCAGTCAGAGTC 2288271 >seq100 Length=2336451 Score = 113 bits (124), Expect = 3e-20 Identities = 145/198 (73%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 981613 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATC 981554 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 981553 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTC 981494 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || || | ||| || ||| || || | ||| ||| Sbjct 981493 CTGGATCTTGCTCTTCAC--ATTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATG 981436 Query 34943 GTCTTTCCCGTGAGGGTC 34960 ||||| || ||||||||| Sbjct 981435 GTCTTGCCAGTGAGGGTC 981418 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | || |||| | || Sbjct 982019 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTC 981960 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 981959 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTC 981900 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| || ||| || || | ||| ||||| Sbjct 981899 CTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGT 981840 Query 34945 CTTTCCCGTGAGGGTC 34960 ||| || ||||||||| Sbjct 981839 CTTGCCAGTGAGGGTC 981824 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | || | ||| |||||||| | |||| ||||||||| ||||| ||||| | Sbjct 980818 CCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 980759 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||| |||||||| || |||||||| | || Sbjct 980758 AGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 980699 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| || ||| || Sbjct 980698 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 980639 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTC 34960 || | || |||||||| || || |||||| Sbjct 980638 TCCAGTGTGATGGTCTTGCCAGTCAGGGTC 980609 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | || |||| |||| Sbjct 981206 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATC 981147 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| || |||||||| | || | ||||||||||| Sbjct 981146 CTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTC 981087 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | ||| || ||| || || | || ||||| Sbjct 981086 CTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGT 981027 Query 34945 CTTTCCCGTGAGGGTC 34960 ||| || ||||| ||| Sbjct 981026 CTTGCCAGTGAGAGTC 981011 >seq99 Length=2590953 Score = 84.2 bits (92), Expect = 1e-11 Identities = 137/196 (70%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | | || ||| ||||| ||||||||||| | ||| ||| || Sbjct 315572 CAGCACCAGGTGGAGGATGGACTC-TTCTGGATGTTATAGTCGGCCAGGGGGCGGCTGTC 315514 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| ||||| |||||||| || | |||||| | || | ||||||||||| Sbjct 315513 CTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGGATGCCCTCCTTGTC 315454 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | | || |||||| | || | ||| | ||| || || | ||| ||||| Sbjct 315453 CTGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCACCTCCAAGGTGATGGT 315394 Query 34945 CTTTCCCGTGAGGGTC 34960 ||| || ||||||||| Sbjct 315393 CTTGCCGGTGAGGGTC 315378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692379245614