Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq18 830 0.0 seq17 515 4e-141 >seq18 Length=145863 Score = 830 bits (920), Expect = 0.0 Identities = 782/994 (79%), Gaps = 2/994 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| || ||||| ||| ||| | ||||| | || |||||||||| ||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || | | | |||||| |||| |||||| | ||||| || || ||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || || ||||| ||||| || || || || | |||||||| | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 |||||| |||||||| ||||||||| | ||||||||||| ||||| ||||||||||| || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| || |||||||| || |||||||||||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | ||||||| | | ||||| | ||| ||||| ||||||||||||||||||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 |||||| ||||| || |||||| ||| || ||||| |||||||| || ||||| | ||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 |||||| || |||| ||| ||||||||||||| ||||| |||| ||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 || || ||||| |||| ||| | || ||||| || |||||||| || |||||||| || Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 ||||||||||| || |||||||| || |||||||| || | ||||| ||||||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAAACAGAGTCACAGAACTATGG 157709 ||| || ||||| || ||| | |||||||| ||||| | || ||| ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 157710 TTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGG 157769 |||||| ||||||||||||||||| || |||||||| |||||||||||||||||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 157770 TCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGC 157829 ||| || ||||||||||||||||||||||||||| | |||||||||||||| || Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 157830 CGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAA 157889 || |||||||| || || |||||||| ||||| || || | || ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 157890 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 157949 ||| ||||| ||||||||||||||||| | | || ||| ||||| || | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 157950 CTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGC 158009 |||| || || | ||||| || |||||||||||||| ||||| || | ||||| Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 158010 ACACAACTTCCCACTGGATCTTGCTGCTGCAGAA 158043 ||||||||||||||| || |||||| | | |||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCTTCAGTAGAA 119639 >seq17 Length=88650 Score = 515 bits (570), Expect = 4e-141 Identities = 735/1023 (72%), Gaps = 20/1023 (2%) Strand=Plus/Minus Query 158772 TGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCT 158831 |||||||| | | || |||||| | || || || || || || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 158832 GGACTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 158891 || || | || | || || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 158892 TTCGCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTT 158950 |||| ||| ||||| ||||||||||| || | ||| || | || || ||||| ||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CTT 87452 Query 158951 TCTTACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTG 159010 | |||||||| ||||| |||||||| | |||||||| || | || | || || Sbjct 87451 CTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATG 87392 Query 159011 GGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGG-GTCCAACTTGGG-GGACTCTGGAA 159067 ||| |||||||| ||||| || ||| || | ||| ||| | ||||| || || ||| Sbjct 87391 GGGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTC--AGTTGGGTGGTCTGTGGGC 87335 Query 159068 TTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACT 159127 ||| || || | || ||||||||||| || ||||| || ||||| || ||||||||||| Sbjct 87334 TTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACT 87275 Query 159128 GGCACGTCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTG 159183 ||| | ||||||| | ||||| ||||| |||||||| ||||| | ||||||| Sbjct 87274 TGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTG 87219 Query 159184 CTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTC 159243 |||| || || |||||||||||||| || | || || || | ||||| || || | Sbjct 87218 CTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGC 87159 Query 159244 CGTCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATT 159303 | |||||| || || ||||| ||| | || | || ||| | ||||| |||||||| | Sbjct 87158 CTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACT 87099 Query 159304 GGACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTAT 159363 |||| || ||||| ||||| |||||||| || || ||| | ||||||| |||||||||| Sbjct 87098 GGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTAT 87039 Query 159364 CTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACA 159423 ||| ||||| || | ||||| || || || | | || ||||| || || |||| Sbjct 87038 GTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACA 86979 Query 159424 CCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACC 159483 | || || || | |||| |||| || ||||| || |||||||| || || |||| Sbjct 86978 CTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACC 86919 Query 159484 GCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTA 159543 | || ||||| || ||||| || | || || || ||||| || |||||||||||||||| Sbjct 86918 GTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTA 86859 Query 159544 TGTTGTTTGTGCCTGTTATGGGTCTATGGA--CATCCAGTATTGGCATTATTGGTCTTGC 159601 || | ||||| ||||| | ||||| |||| | || ||||| |||| || ||||| Sbjct 86858 TGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCA--ATTGGTGTTATCGGACTTGC 86801 Query 159602 TCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGA 159661 ||| || | || || || || || || ||||||||| | ||||| || || || || Sbjct 86800 TCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGA 86741 Query 159662 ATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGC 159721 ||| || || |||||||| || ||||||||||| || ||||| | | || ||| |||| Sbjct 86740 ATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGC 86681 Query 159722 ACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAA 159781 || || || || |||||||| | | |||||||| || ||| ||||| | || || Sbjct 86680 GGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 86621 Query 159782 CGC 159784 ||| Sbjct 86620 CGC 86618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545272877512480