Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq18 827 0.0 seq17 576 2e-159 seq93 96.9 4e-15 >seq18 Length=145863 Score = 827 bits (916), Expect = 0.0 Identities = 779/986 (79%), Gaps = 5/986 (1%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || ||||| || | |||||| |||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 |||||| |||||||| ||||| || | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 177857 CTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATACC 177915 | ||||||| | | ||||| | ||| || ||||| ||||||||||||||||| | || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 177916 GTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCG 177975 || |||| ||||| || |||||| ||| || ||||||||||| |||||||| || | | Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 177976 CAGTCTTTCTAGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTATGCCTCTTGGTA 178035 | || || | |||| ||| ||||||||||||||||||| |||| ||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 178036 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACC 178095 | || || ||||| |||| |||| |||| |||||||| || ||||| ||||||||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 178096 CGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 178155 | ||||||||||| ||||||||||| || |||||||| || |||||||| |||||||| | Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 178156 GAAGTCTCGTTACTTCTTCGCTCGTCCGTGAGACGACAGAAACTGAGTCCCAGAACTATG 178215 | ||| || |||||||| || ||||||| || || || | || || ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 178216 GTTACAAGTTCGGACAAGAAGAAGAAACATATAACATCGTCGCAGCCCATGGTTACTTCG 178275 ||||||| ||||| |||||||||||||| || ||||| || || || || |||||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 178276 GTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTCG 178335 ||||| | ||||||||||| || || ||||||||||| |||||||| ||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 178336 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTTGGTGTATCCACCATGGCATTTA 178395 | || |||||||||||||| |||||||| || || |||||| | || || |||||||| | Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 178396 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178455 |||| || |||||||||||||||||||| | | ||| ||||| || || |||||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 178456 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAAAGAAATA 178515 | |||| ||| | ||||||||||| || || |||||||| |||||||||||||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAA-C 119675 Query 178516 GCACATAACTTCCCGCTTGATCTTGC 178541 ||||| |||||||| || || ||||| Sbjct 119674 GCACACAACTTCCCACTAGACCTTGC 119649 >seq17 Length=88650 Score = 576 bits (638), Expect = 2e-159 Identities = 749/1025 (73%), Gaps = 18/1025 (2%) Strand=Plus/Minus Query 178936 TGGTTCGATGTCTTGGATGACTGGCTTAATCGGGATCGCTTTGTCTTTGTGGGTTGGTCT 178995 ||||| |||| | ||||||||| | || || || ||||| || || || |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 178996 GGACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 179054 || || |||| |||||| || ||||| ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 179055 TTTTGTTACGAGTTGGTACACCCATGGTCTTGCTAGTTCCTATCTTGAAGG-TGCTAACT 179113 || ||||| ||||||||| ||||| ||||| ||||| || | ||||| ||| |||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACT 87453 Query 179114 TTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACT 179171 | | || ||||| || || || || || | |||||||| || | || ||| || Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CT 87395 Query 179172 TTGGGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGA 179230 ||||| |||||| | || || || ||| | || ||||| || | || || || ||| Sbjct 87394 ATGGGGGCCTGAGGCACAAGGTGACTTTACT-CGCTGGTGTCAGTTGGGTGGTCTGTGGG 87336 Query 179231 ATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAAC 179290 |||||| ||| | || |||||||| || || ||||| || ||||| || |||||||||| Sbjct 87335 CTTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAAC 87276 Query 179291 TGGCACGTCTCATCGGTA----TCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATT 179346 | ||| | ||||||| | ||||||||||| || ||||| || | | |||||| Sbjct 87275 TTGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATT 87220 Query 179347 GCCGTATTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCG 179406 || || ||||| || || || ||||| || | |||||||| | |||||||||||| Sbjct 87219 GCTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCG 87160 Query 179407 CCATCGTTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAAC 179466 || |||||||| ||||| ||||| |||| | |||||||| ||||||||||||||| Sbjct 87159 CCTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAAC 87100 Query 179467 TGGACACTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTC 179526 ||||| || ||||| || ||||||||||| || |||||| | || |||| ||| || || Sbjct 87099 TGGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTA 87040 Query 179527 TCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAAC 179586 | ||| ||||| |||| ||| |||||||| || | | ||||||||| || || ||| Sbjct 87039 TGTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAAC 86980 Query 179587 ACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAAC 179646 || || || ||| || | ||||||| || ||||| || |||||||| ||||| ||| Sbjct 86979 ACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAAC 86920 Query 179647 CGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGCGTTGGTTCCACTTCTTT 179706 ||||||||||| || ||||| || || | || || || |||||| | || |||||| Sbjct 86919 CGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTT 86860 Query 179707 AAGCTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTAGCT 179766 | ||| ||||| ||||| | ||||||||| | | | ||||| | || || || ||| Sbjct 86859 ATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCT 86800 Query 179767 CTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAG 179826 ||||| | || || ||||| ||||| ||||||||| | ||||| || || ||||| Sbjct 86799 CTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAA 86740 Query 179827 TTCGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCA 179886 |||||||| ||||| ||||| ||||||||||| || ||||| | | || ||| |||| Sbjct 86739 TTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCG 86680 Query 179887 CCTGCTGATCAACCACATGAAAACTTCATCTTCCCAGAAGAAGTCCTACCTAGTGGTAAC 179946 || || || ||||||||||| | | |||||||| || || |||| |||| ||| Sbjct 86679 GCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 86620 Query 179947 GCACT 179951 || || Sbjct 86619 GCTCT 86615 >seq93 Length=1853137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/192 (71%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 138535 CAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCT 138594 ||||||||||| ||||| || || || || || |||| || || ||||| || || ||| Sbjct 202346 CAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCT 202287 Query 138595 GGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAG 138654 ||||| || || | || || || || | || || ||| || ||||| |||||| Sbjct 202286 GGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAG 202227 Query 138655 TCTTTCCTTGATGATGACCAAATTGCAGCA----GGATTTATCATGACTTGCGTAGCATA 138710 |||||| | ||||| ||||| |||| | || || || | || ||||| ||||| Sbjct 202226 TCTTTCTTGGATGAGGACCA----GCAGAAGAACGGTTTCGTCCTTACCTGCGTCGCATA 202171 Query 138711 CCCCACATCCGA 138722 |||||| ||||| Sbjct 202170 CCCCACCTCCGA 202159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605666397490960