Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq106 122 8e-23 seq100 122 8e-23 seq20 105 6e-18 seq2 104 2e-17 seq102 93.3 4e-14 >seq106 Length=3132237 Score = 122 bits (134), Expect = 8e-23 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||||||||||||||||||||||| || ||||||||| || || Sbjct 1547885 AGGCAGGCGAAGTCGGTGTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTG 1547944 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAG 120759 ||||||||||||| | |||||| |||| |||||| ||| ||| ||| Sbjct 1547945 AGGCCGGGCATGAGCAGGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAG 1548004 Query 120760 AACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTG 120819 | |||||||||| ||| || || |||| |||||| | ||| | || | | |||| Sbjct 1548005 TGGATGCCCTCCACGCAGGCGAACGCCACCAGGCGCTCCG-CAAAGCTGCTGGC--GCTG 1548061 Query 120820 TCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 ||||||| | | ||||||| ||||| ||| |||||| |||| Sbjct 1548062 CCGATCCAGTGCTGCGCCCACTGCGCCTTCTTGGCCACGCATGGCA 1548107 Score = 122 bits (134), Expect = 8e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 2288943 GGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 2289001 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||| ||||||||||| || || ||||| |||||||| |||||| || Sbjct 2289002 CGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACT 2289061 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | || | ||||| | | |||||| || | ||||| ||| ||||| ||||||| Sbjct 2289062 TGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCAGTCAGAG 2289121 Query 133642 T 133642 | Sbjct 2289122 T 2289122 Score = 116 bits (128), Expect = 4e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || ||| ||| | | | ||||| |||||||||| Sbjct 2288091 GGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 2288149 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 2288150 CGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 2288209 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || |||||| || | |||| ||| ||||| ||||||| Sbjct 2288210 TCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTCTTGCCAGTCAGAG 2288269 Query 133642 T 133642 | Sbjct 2288270 T 2288270 Score = 116 bits (128), Expect = 4e-21 Identities = 136/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 2288544 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGC 2288602 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| |||||| || Sbjct 2288603 CGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACT 2288662 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || |||||| || | |||| ||| ||||| || |||| Sbjct 2288663 TCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTCTTGCCAGTGAGAG 2288722 Query 133642 T 133642 | Sbjct 2288723 T 2288723 >seq100 Length=2336451 Score = 122 bits (134), Expect = 8e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| ||| | | | ||||| |||||||||| Sbjct 980789 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCA-TCCTCCAGCTGCTTGC 980731 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| ||||||||||| |||||||| |||||| || Sbjct 980730 CGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCT 980671 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || |||||| || | |||| ||| ||||| ||||| | Sbjct 980670 TCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTCTTGCCAGTCAGGG 980611 Query 133642 T 133642 | Sbjct 980610 T 980610 Score = 122 bits (134), Expect = 8e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 981191 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 981133 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| ||||| ||||| |||||||| |||||| || Sbjct 981132 CGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGGATCTTGCTCT 981073 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || |||||| || | |||| ||| ||||| || |||| Sbjct 981072 TCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTCTTGCCAGTGAGAG 981013 Query 133642 T 133642 | Sbjct 981012 T 981012 Score = 122 bits (134), Expect = 8e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| ||| |||| | | | ||||| |||||||||| Sbjct 981598 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCA-TCCTCCAGCTGCTTGC 981540 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| |||||||| || |||||||| |||||| || Sbjct 981539 CGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGCTCT 981480 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| | || |||||| || | ||||| ||| ||||| || || | Sbjct 981479 TCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 981420 Query 133642 T 133642 | Sbjct 981419 T 981419 Score = 118 bits (130), Expect = 1e-21 Identities = 134/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| ||| |||| |||||| ||||||||||| Sbjct 982004 GGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTGCC 981945 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || ||||| || |||||||| |||||| ||| Sbjct 981944 GGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGCTCTT 981885 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| | || |||||| || | ||||| ||| ||||| || || || Sbjct 981884 CACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 981825 >seq20 Length=132363 Score = 105 bits (116), Expect = 6e-18 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 120652 TCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATG 120711 || |||||||||||||||||||||| ||| || |||| ||||| ||||| |||| Sbjct 119687 TCGGTGTGCAGGCCCTCGTCGCGCGCTATGAGGGAGTTGGAGAACGTGAGGCCCTTCATG 119628 Query 120712 ATGCCTTTCGTCTTGATGTAG--AATATGGCG-GCA-AAGCTGCCCGAAAAGAACACGCC 120767 | || || |||| | || | || ||| ||| || |||||||| || | ||||| Sbjct 119627 AGA--TTGCG-CTTGCGG-AGCCAGTAGAGCGCGCAGAAACTGCCCGAGAACATGACGCC 119572 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT-GTCGATCC 120826 |||||||||||| ||| ||||| ||||| ||| ||||| | ||| | | | |||||| Sbjct 119571 CTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGT-GGAGTCGCGGTCGGCGATCC 119513 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884 ||||| |||||| ||||||| || | ||| || || ||| | |||||||| Sbjct 119512 ACTTCTGCGCCCACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCACTGCGTTCAG 119455 Score = 105 bits (116), Expect = 6e-18 Identities = 172/238 (72%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 120652 TCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATG 120711 || |||||||||||||||||||||| ||| || |||| ||||| ||||| |||| Sbjct 121599 TCGGTGTGCAGGCCCTCGTCGCGCGCTATGAGGGAGTTGGAGAACGTGAGGCCCTTCATG 121540 Query 120712 ATGCCTTTCGTCTTGATGTAG--AATATGGCG-GCA-AAGCTGCCCGAAAAGAACACGCC 120767 | || || |||| | || | || ||| ||| || |||||||| || | ||||| Sbjct 121539 AGA--TTGCG-CTTGCGG-AGCCAGTAGAGCGCGCAGAAACTGCCCGAGAACATGACGCC 121484 Query 120768 CTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT-GTCGATCC 120826 |||||||||||| ||| ||||| ||||| ||| ||||| | ||| | | | |||||| Sbjct 121483 CTCCACGATGGCGAAGCAGACCAGGCGCTTGGCGAACGT-GGAGTCGCGGTCGGCGATCC 121425 Query 120827 ACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAG 120884 ||||| |||||| ||||||| || | ||| || || ||| | |||||||| Sbjct 121424 ACTTCTGCGCCCACGCGGCCTTCTTCTTGATGCATGGGATGGTCTCCACTGCGTTCAG 121367 >seq2 Length=534433 Score = 104 bits (114), Expect = 2e-17 Identities = 120/162 (74%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || || || | |||||| || || ||||| || | | ||||||| || ||||| Sbjct 280806 GCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACAATCTCA 280747 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | ||| ||||||||||| ||||| ||||| |||| ||||| ||| |||||||| Sbjct 280746 GTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTGTTGCAG 280687 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGC 148982 | ||||||||| |||||||| || ||| || || |||||| Sbjct 280686 GAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTCAACCTGC 280645 >seq102 Length=2901463 Score = 93.3 bits (102), Expect = 4e-14 Identities = 121/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 120640 AGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTC 120699 ||||| || ||||| ||| |||||||||||||| || || ||||||||| || || Sbjct 1633787 AGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 1633728 Query 120700 AGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCA-AAGCTGCCCGAAAA 120758 |||||| |||||| ||| | |||||| |||| | || ||| |||||||| || Sbjct 1633727 AGGCCGTGCATGAGGCCGCGCTTCTTGAGCCAGAAGA-CGCTGCAGAAGCTGCCGCTGAA 1633669 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAA 120803 ||| | |||||||||| ||| | || |||| ||||| || || Sbjct 1633668 GAAGATGCCCTCCACGCAGGCCCACGCCACCAGCCGCTCCGCAAA 1633624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420159467440