Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq87 134 3e-26 >seq87 Length=36794 Score = 134 bits (148), Expect = 3e-26 Identities = 154/204 (75%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 96347 AGGGTGAGCTGAAGGGTCGCGTTATCGATACGAGACATATTACAGGTGCCAGAAGGCTGG 96406 ||||| || | ||||| ||||| ||||| || || | || ||||| || || |||||| Sbjct 17220 AGGGTCAGGTTCAGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGG 17279 Query 96407 TGCTCTTCGGGTTTGAGGCCGAAAGAGTAGACATTGATGCCTGTGG---CGGGGACGTTG 96463 ||||| ||||| ||||| ||||| ||||| || |||||||| ||| ||||| |||| Sbjct 17280 TGCTCCTCGGGCTTGAGTCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGGATGTTG 17339 Query 96464 GTATGGTGTTGATAAGGTTGTACAAGATTGAAGTAACGA-CCCATGCGCTCCGAGAAACG 96522 || ||||| || || || || || || ||||||| |||| |||| ||||| ||| | Sbjct 17340 GTGTGGTGCTGGTAGGGCTGCACCAGGTTGAAGT-ACGAGCCCAGACGCTCGTCGAACCT 17398 Query 96523 ATCATGACCGTTAAGCTGGAGCTT 96546 || || ||||| ||||| ||||| Sbjct 17399 GTCGTGGCCGTTGAGCTGCAGCTT 17422 Score = 125 bits (138), Expect = 2e-23 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 96842 TCTTTGCAGGGATGATTGAAGTTAAGCTTGATCTTGTTAGAGACCGAGGAGACAGACTCG 96901 ||||| ||| || |||||||| || ||||||||| | | | |||||| |||||| Sbjct 17529 TCTTTCACGGGGTGGTTGAAGTTCAGGCGGATCTTGTTGGCGTTCTGGGAGACGGACTCG 17588 Query 96902 TCACCAGTGAACTGAACCTGCTCGATGAGGTACTCGTGCGAGACCTGCGCGAAGCGGCGA 96961 | || |||||||| | ||||||||| ||||||||||| |||||||| ||||| | ||| Sbjct 17589 CCGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCTGGGCGAACCTGCGG 17648 Query 96962 CGCTCATCAGTGTCAAGGAAGATGTAGTC 96990 ||||| || ||||| ||| ||| |||||| Sbjct 17649 CGCTCGTCGGTGTCCAGGTAGACGTAGTC 17677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186811188159866