Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq18 675 0.0 >seq18 Length=145863 Score = 675 bits (748), Expect = 0.0 Identities = 743/979 (76%), Gaps = 10/979 (1%) Strand=Plus/Minus Query 19514 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 19573 ||||| ||| || | ||||| ||||| |||| |||||||| || ||||| || Sbjct 120622 TGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGATCCCT 120563 Query 19574 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGA 19632 ||| | | || || |||| |||||||| ||||| |||| || || || || || Sbjct 120562 ACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGTAGA 120504 Query 19633 CATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATC 19692 ||| ||||| ||||| || || ||||| ||| || ||||| || ||||||||||| || Sbjct 120503 CATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCATTTC 120444 Query 19693 GGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTCTACCCAATTTGGGAAG 19751 || || || ||||| | || ||| || || || || |||||||||||||||||||||| Sbjct 120443 TGGTGCTGTTGTTCCTA-CATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGAAG 120385 Query 19752 CTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19811 || ||||||||| |||||||| |||||||| || || | |||||| | || | |||| Sbjct 120384 CTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCACT 120325 Query 19812 TCCTCATTGGCATCTA-TGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGA 19870 || || | ||||| | |||| ||||||| || |||||||||||| | || ||||| Sbjct 120324 TCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGA 120266 Query 19871 ATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTT 19930 ||| | || ||||| ||| || |||||||| || |||||||| || |||| || || Sbjct 120265 ATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 120206 Query 19931 CTCGTCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGT 19990 || ||||||| | ||||| ||| ||||| |||| ||||||||||||||| || || Sbjct 120205 ATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAGGA 120146 Query 19991 ACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCAC 20050 || ||||||| |||| | || |||||||| || || ||||| || |||||||| |||||| Sbjct 120145 ACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCAC 120086 Query 20051 ATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTT 20110 ||||||||||| |||||||| |||||||| ||||| ||| || ||||||||||| || Sbjct 120085 ATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTCTA 120026 Query 20111 GTTACGTCCTCGCTTGTGCGTGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACA 20168 || || || || ||| | ||||| |||||||| | ||| |||| ||| |||||||| Sbjct 120025 GTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAA--TCAGCAAACGCTGGTTACA 119968 Query 20169 AGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTT 20228 | || || ||||||||||| || || ||||| || || || || ||||||||||| ||| Sbjct 119967 AATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTC 119908 Query 20229 TGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCT 20288 | ||||||||||||||||| |||||||| ||||| || ||||||||||||||||| | Sbjct 119907 TAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTT 119848 Query 20289 GGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGA 20348 |||| || || || || ||||| |||| | || | ||||| ||||| || || || | Sbjct 119847 GGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTA 119788 Query 20349 ACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGG 20408 |||| |||||||| |||||||| || | ||| | ||||| || || | ||||||| Sbjct 119787 ACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACACTTGGG 119728 Query 20409 CTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATA 20468 |||||| |||| ||||| || || || | || || ||||| ||| | || || || | Sbjct 119727 GTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCACACA 119668 Query 20469 ACTTCCCACTTGACCTTGC 20487 |||||||||| |||||||| Sbjct 119667 ACTTCCCACTAGACCTTGC 119649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148828612661748