Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq18 625 9e-175 >seq18 Length=145863 Score = 625 bits (692), Expect = 9e-175 Identities = 732/981 (75%), Gaps = 6/981 (1%) Strand=Plus/Minus Query 28642 TGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCG 28701 ||||| ||| || | ||||| ||||| |||| |||||||| || ||||| || Sbjct 120622 TGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGATCCCT 120563 Query 28702 TGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGA 28760 ||| | | || || |||| |||||||| ||||| |||| ||||| || || || Sbjct 120562 ACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGTAGA 120504 Query 28761 CATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATC 28820 ||| ||||| ||||| || ||||| | || ||| || || || ||||||||||| || Sbjct 120503 CATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCATTTC 120444 Query 28821 GGGAGCCGTCGTACCGAGCAGCAAT-GCCATCGGACTACACTTCTACCCAATTTGGGAAG 28879 || || || || || | || ||| || || || || |||||||||||||||||||||| Sbjct 120443 TGGTGCTGTTGTTCCTA-CATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGAAG 120385 Query 28880 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 28939 || ||||||||| |||||||| |||||||| || || | |||||| | || | |||| Sbjct 120384 CTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCACT 120325 Query 28940 TCCTCATTGGCGTCTA-TGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGA 28998 || || | ||| | | |||| ||||||| || |||||||||||| | || ||||| Sbjct 120324 TCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGA 120266 Query 28999 ATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTC 29058 ||| | || ||||| ||| || ||||| || || || ||||| || |||| || ||| Sbjct 120265 ATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 120206 Query 29059 CTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGC 29118 || ||||||| ||||||||||||| || || | |||||||||||||||||||| Sbjct 120205 ATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAGGA 120146 Query 29119 ACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCAC 29178 || ||||||| |||| | || |||||||| || || ||||| || |||||||| |||||| Sbjct 120145 ACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCAC 120086 Query 29179 ATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTT 29238 ||||| || |||||||| ||||||||||| || || || || ||||||||||| || Sbjct 120085 ATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTCTA 120026 Query 29239 GTCACGTCCTCGCTTGTGCGTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAG 29298 || || || || ||| | ||||| || ||||| || || ||| ||||||||| Sbjct 120025 GTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGGTTACAAA 119966 Query 29299 TTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTG 29358 || || ||||||||||| ||||| ||||| || || || |||||||||||||| ||| | Sbjct 119965 TTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTCTA 119906 Query 29359 ATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGG 29418 ||||||||||| ||||| ||||| || ||||| || ||||||||||||||||| ||| Sbjct 119905 ATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTTGG 119846 Query 29419 CCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAAC 29478 || || || || || ||||| |||| | || | ||||| ||||| || || || ||| Sbjct 119845 CCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTAAC 119786 Query 29479 GGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCT 29538 || || ||||| |||||||| || | ||| | ||||| || || || ||||||| | Sbjct 119785 GGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACACTTGGGGT 119726 Query 29539 GATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAAC 29598 || | |||| || || ||||| || | ||||||||||| || | || || || ||| Sbjct 119725 GACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGCACACAAC 119666 Query 29599 TTCCCACTTGATCTGGCTACA 29619 |||||||| || || ||| || Sbjct 119665 TTCCCACTAGACCTTGCTTCA 119645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146665415384676