Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq18 682 0.0 >seq18 Length=145863 Score = 682 bits (756), Expect = 0.0 Identities = 744/980 (76%), Gaps = 6/980 (1%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||||| ||||| || || || || ||||| ||||| || || |||||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 18784 ATGATTCCGTGTCTCCTTGCAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACC 18842 ||||| || ||| | | || ||| | ||| |||||||| || || |||||||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 18843 TCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAA 18902 |||||||||||| ||||| ||||| |||||||| |||| ||| ||||| || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 18903 CATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT-GCCATCGGACTACACTTCTACCCAA 18961 |||||| || || || || ||||| | || ||| || || || || ||||||||||||| Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTA-CATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 18962 TTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGG 19021 ||||||||||| ||||||||| |||||||| |||||||| || || | |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 19022 TCTTCCACTTCCTCATTGGCGTCTA-TGCTTACATGGGACGCGAGTGGGAACTTAGCTAT 19080 | | |||||| || | ||| | | |||| ||||||| || |||||||||||| | Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTC 120275 Query 19081 CGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCT 19140 || |||| ||||| || ||||| ||| || ||||| || || ||||| || || || Sbjct 120274 CGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 120215 Query 19141 GCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGT 19200 || || ||| | |||| || | ||||||||||| || || | ||||||||||||| Sbjct 120214 GCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGT 120155 Query 19201 ATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCAC 19260 ||| || || ||||||| |||| |||| ||||| ||||| || |||||||| |||||| Sbjct 120154 ATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCAC 120095 Query 19261 CCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCAC 19320 || ||||||||||| ||||| |||||||||||||| || ||||| || || |||||| Sbjct 120094 CCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCAC 120035 Query 19321 GGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTAT 19380 ||||| || || || || || ||| | |||||||||||||| | | ||| ||| | Sbjct 120034 GGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCT 119975 Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 || ||||| || || ||||||||||| ||||| |||||||||||||| || || || ||| Sbjct 119974 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTT 119915 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 ||||| || || ||||| ||||| || |||||||| ||||| || || ||||| | Sbjct 119914 GGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTT 119855 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| ||||| || |||||| | || ||||| | || ||||||||| Sbjct 119854 GCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTC 119795 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||| | || || || ||||| |||||||| || | ||| | ||||| || || | Sbjct 119794 AACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAAC 119735 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 ||||||| |||||| |||| ||||| ||||| || | || |||||||||||| | || Sbjct 119734 ACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAAC 119675 Query 19681 GCTCATAACTTCCCACTTGA 19700 || || ||||||||||| || Sbjct 119674 GCACACAACTTCCCACTAGA 119655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141148622328948