Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20 158 2e-32 seq102 136 6e-26 seq106 104 3e-16 seq4 102 1e-15 seq94 98.7 1e-14 seq91 98.7 1e-14 seq105 89.7 7e-12 >seq20 Length=132363 Score = 158 bits (174), Expect = 2e-32 Identities = 375/557 (67%), Gaps = 11/557 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||||||| || | ||| || | || ||| | || |||| |||| | Sbjct 119082 CGAGCCGCTGCTGCAGGA---CTCGAGACGGTACGTGCTGCTTCCGATCCAGTACCCGGA 119138 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||||| || ||| | | || ||| | || | || ||||||| ||| ||| |||| | Sbjct 119139 CATCTGGGAGATCTACAAGAGAG-CCGTGTCCGCGTTCTGGACCGTCGACGAGATCGATC 119197 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || |||| | |||||| | ||| ||| || |||||||| ||||||| Sbjct 119198 TCAAGAGCGACGTCGATGACTGGGAGCACCGCCTGACGGAGAACGAGCGCACGTTCATCA 119257 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || |||| ||||| || ||| || || |||||| |||||||||| | Sbjct 119258 AGAACATCCTGGCCTTCTT-CGCGGCTTCGGACTTCATCGTCAACGAGAACCTGATGGAT 119316 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||||| |||||| | | || ||||| | | || |||| ||||||| ||| Sbjct 119317 CGCTTCATGAACGAGGTCAAGGTCCCCGAGGCGCAGTGTTTCTACGCGTTCCAGGCGGCC 119376 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || | ||| |||| ||| || | || | ||||||| | || |||||| Sbjct 119377 ATAGAGTCGCTACACAGCGAAAGCTATTCCTTACTCCTGGACACCTTCATCCGGGACCCC 119436 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | |||||| |||| | | ||| | || || | || | | | ||| |||||| Sbjct 119437 GCTGAGAAGCGCCACGCCCTGAACGCAGTGGAGACCATCCCATGCATCAAGAAGAAGGCC 119496 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 | |||||| |||||||||| | | | | ||| || || ||| |||| || ||| Sbjct 119497 GCGTGGGCGCAGAAGTGGATCGCCGACC-GCGACTCCACG-TTCGCCAAGCGCCTGGTCT 119554 Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 |||| ||| ||| |||||| || | |||||||||||||||||||| ||| |||||| Sbjct 119555 GCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCTGCGCGCTCTACTGGCTCC 119614 Query 1456251 AGAAGCGCGGCCTCATG 1456267 |||||| |||||| Sbjct 119615 GCAAGCGCAATCTCATG 119631 Score = 158 bits (174), Expect = 2e-32 Identities = 375/557 (67%), Gaps = 11/557 (2%) Strand=Plus/Plus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCG 1455774 |||||||||||||| || | ||| || | || ||| | || |||| |||| | Sbjct 120994 CGAGCCGCTGCTGCAGGA---CTCGAGACGGTACGTGCTGCTTCCGATCCAGTACCCGGA 121050 Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 || ||||| || ||| | | || ||| | || | || ||||||| ||| ||| |||| | Sbjct 121051 CATCTGGGAGATCTACAAGAGAG-CCGTGTCCGCGTTCTGGACCGTCGACGAGATCGATC 121109 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGT--CGC-TGAGCGACGACGAGCGCCATTTCATCA 1455891 || |||| | |||||| | ||| ||| || |||||||| ||||||| Sbjct 121110 TCAAGAGCGACGTCGATGACTGGGAGCACCGCCTGACGGAGAACGAGCGCACGTTCATCA 121169 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 || || |||| ||||| || ||| || || |||||| |||||||||| | Sbjct 121170 AGAACATCCTGGCCTTCTT-CGCGGCTTCGGACTTCATCGTCAACGAGAACCTGATGGAT 121228 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 ||||| ||||| |||||| | | || ||||| | | || |||| ||||||| ||| Sbjct 121229 CGCTTCATGAACGAGGTCAAGGTCCCCGAGGCGCAGTGTTTCTACGCGTTCCAGGCGGCC 121288 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || | ||| |||| ||| || | || | ||||||| | || |||||| Sbjct 121289 ATAGAGTCGCTACACAGCGAAAGCTATTCCTTACTCCTGGACACCTTCATCCGGGACCCC 121348 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 | |||||| |||| | | ||| | || || | || | | | ||| |||||| Sbjct 121349 GCTGAGAAGCGCCACGCCCTGAACGCAGTGGAGACCATCCCATGCATCAAGAAGAAGGCC 121408 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 | |||||| |||||||||| | | | | ||| || || ||| |||| || ||| Sbjct 121409 GCGTGGGCGCAGAAGTGGATCGCCGACC-GCGACTCCACG-TTCGCCAAGCGCCTGGTCT 121466 Query 1456192 GCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCA 1456250 |||| ||| ||| |||||| || | |||||||||||||||||||| ||| |||||| Sbjct 121467 GCTTCGCCATCGTGGAGGGCGTCATGTTCTCGGGCAGTTTCTGCGCGCTCTACTGGCTCC 121526 Query 1456251 AGAAGCGCGGCCTCATG 1456267 |||||| |||||| Sbjct 121527 GCAAGCGCAATCTCATG 121543 >seq102 Length=2901463 Score = 136 bits (150), Expect = 6e-26 Identities = 149/194 (77%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||||||| || || |||||||| |||||| | ||||| ||||||| |||| Sbjct 1634116 ATCATCATCGAGGCGGTTGACATCGAGAAGGAGTTTCTGTGCGAGGCGCTGCCCGTGGGC 1634175 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || |||||||||||| | |||||| |||||||||| | | ||||| |||||||||| Sbjct 1634176 CTGATCGGCATGAACAAGGAC-CTCATGAGCCAGTACATCG-ACTTTGTGGCCGACCGCC 1634233 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| | || || |||| | || |||||||| | || ||||||| ||| |||||| Sbjct 1634234 TGCTGGTCGCCCTGGGCT-CAGAAAAGCACTATGGCACCCCCAACCCCTTCGACTGGATG 1634292 Query 1456703 GAGTTGATCTCGCT 1456716 ||| | |||| || Sbjct 1634293 GAGCTCCTCTCTCT 1634306 Score = 100 bits (110), Expect = 4e-15 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| |||||||| || | | ||| |||| ||||||||||| ||| ||||| || Sbjct 1633623 CTTTGCGGAGCGGCTGGTGGCGTGGGCCTGCGTGGAGGGCATCTTCTTCAGCGGCAGCTT 1633682 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||| | |||| ||||||||||||||||||||||||| ||| | || ||| ||||| Sbjct 1633683 CTGCAGCGTCTTCTGGCTCAAGAAGCGCGGCCTCATGCACGG-CCTCACCTTCTCCAACG 1633741 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||| |||||||| Sbjct 1633742 AGCTCATCTCCCGCGACGA 1633760 Score = 93.3 bits (102), Expect = 6e-13 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||| || ||| ||||||| || ||| ||||| |||| |||| ||||||| | | Sbjct 2682005 CCATCTCCATCCTGAACTCCTTCATCACTGACATCTTCGAGAAGATCGCCACCGAGACTG 2681946 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 | ||||| |||| ||||||| ||| | | |||||||||||||| |||| Sbjct 2681945 CACAGCTGGCCCGCTACAACAAGAAGCCCACTGTGACTTCTCGCGAGATCCAGACAGCCG 2681886 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || ||| | | ||| || ||||||| |||||| || || |||||||||| Sbjct 2681885 TGAGGCTAATCCTCCCCGGAGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 2681832 >seq106 Length=3132237 Score = 104 bits (114), Expect = 3e-16 Identities = 153/209 (73%), Gaps = 12/209 (6%) Strand=Plus/Minus Query 1456519 GCAGATCATCGT---CGAGGCCGTCGAGATCGAGAAAGAGTT-TGT--CAGCGAGTCGCT 1456572 ||| | |||||| |||||| || ||| | ||| | ||||| || ||||| |||| Sbjct 1547521 GCACAACATCGTGCGCGAGGCGGTGGAGCTGGAGCACGAGTTCTGCTGCAGCG---CGCT 1547465 Query 1456573 GCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTC 1456632 ||||||| |||| | ||||||||||| | |||||| | |||||||| || | || Sbjct 1547464 GCCGGTGTCGCTGGTGGGCATGAACGCGGGC-CTCATGGGGCAGTACATCGAGTAC-GTG 1547407 Query 1456633 GCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTT 1456692 |||||||||||||| | || |||| |||| || | ||| ||| ||||||| || Sbjct 1547406 GCCGACCGCCTGCTGGTGGAGCTCCAGTGCG-AGCGCCTGTACAACACGCCCAACCCCTT 1547348 Query 1456693 CCCATGGATGGAGTTGATCTCGCTCGAGG 1456721 | ||||||||| ||||||||||| ||| Sbjct 1547347 CGACTGGATGGAGATGATCTCGCTCCAGG 1547319 Score = 86.0 bits (94), Expect = 9e-11 Identities = 104/139 (75%), Gaps = 2/139 (1%) Strand=Plus/Minus Query 1456172 CTTTGCCGAGCGGCTCGTCGGCTTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAGTTT 1456230 |||||| ||||| || || | || ||| |||| ||||||||| ||| ||| || Sbjct 1548049 CTTTGCGGAGCGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCTT 1547990 Query 1456231 CTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACG 1456290 |||||||||||| ||||||||||||||| ||||||||||| | || ||| ||||| Sbjct 1547989 CTGCGCCATCTTCTGGCTCAAGAAGCGCCTGCTCATGCCCGG-CCTCACCTTCTCCAACG 1547931 Query 1456291 AATTTATCAGTCGCGACGA 1456309 | | ||| |||||||| Sbjct 1547930 AGCTCATCTCGCGCGACGA 1547912 >seq4 Length=1187754 Score = 102 bits (112), Expect = 1e-15 Identities = 93/115 (81%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| | ||||||| ||||||| || | ||||||||||| | || || Sbjct 989096 CTGCTTGCCCATGGCGGACTGGTAGGTGTTGCGGGGGGACTGGTTGTGGTCCGGGAAGGG 989155 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGA-GCAGCGGGTGGACCTCGACGTGCGT 1601472 ||||||||| |||||| ||||||| || | | || ||||||| |||| ||| || Sbjct 989156 GATGATGGAGGCGCAGACGCCCAGGATCATGGAG-GGGTGGATCTCGCAGTGGGT 989209 Score = 86.0 bits (94), Expect = 9e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 || || ||| | ||||| || ||| ||||| |||| |||| ||| ||| ||| Sbjct 946921 ATCTCCATCCTAAACTCCTTCATCACGGACATCTTCGAGAAGATCGCCACAGAGACCGCG 946980 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||||| |||| ||||||| ||| | | | |||||||||||||| || ||| Sbjct 946981 CAGCTGGCTCGCTACAACAAGAAGCCCACTGTGACCTCTCGCGAGATCCAGACAGCTGTG 947040 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || ||| | | ||| || ||||||| |||||| || || |||||||||| Sbjct 947041 AGGCTCATCCTTCCCGGAGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 947092 >seq94 Length=1310662 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||| || ||| ||||||| || ||| ||||| |||| |||| ||| ||| | | Sbjct 1290080 CCATCTCCATCCTGAACTCCTTCATCACGGACATCTTCGAGAAGATCGCCACTGAGACTG 1290021 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| |||| ||||||| ||| | | | ||||||||||||||||| | Sbjct 1290020 CTCAGCTGGCCCGCTACAACAAGAAGCCCACTGTGACCTCTCGCGAGATCCAGACCGCTG 1289961 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || ||| | | ||| || ||||||| |||||| || || |||||||||| Sbjct 1289960 TGAGGCTCATCCTCCCCGGAGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 1289907 >seq91 Length=742804 Score = 98.7 bits (108), Expect = 1e-14 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||| || ||| ||||||| || ||| ||||| |||| |||| ||| ||| | | Sbjct 25485 CCATCTCCATCCTGAACTCCTTCATCACGGACATCTTCGAGAAGATCGCCACTGAGACTG 25544 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| |||| ||||||| ||| | | | ||||||||||||||||| | Sbjct 25545 CTCAGCTGGCCCGCTACAACAAGAAGCCCACTGTGACCTCTCGCGAGATCCAGACCGCTG 25604 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || ||| | | ||| || ||||||| |||||| || || |||||||||| Sbjct 25605 TGAGGCTCATCCTCCCCGGAGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 25658 >seq105 Length=3273802 Score = 89.7 bits (98), Expect = 7e-12 Identities = 124/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 |||| || ||| ||||||| || ||| ||||| |||| |||| ||| ||| ||| Sbjct 593034 CCATCTCCATCCTGAACTCCTTCATCACTGACATCTTCGAGAAGATCGCCACTGAGACCG 593093 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| |||| ||||||| ||| | | | || ||||||||||| || | Sbjct 593094 CTCAGCTGGCACGCTACAACAAGAAGCCCACAGTGACCTCTCGTGAGATCCAGACAGCTG 593153 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | || || | | ||| || ||||||| |||||| || || |||||||||| Sbjct 593154 TGAGGCTCATTCTCCCCGGAGAGCTGGCCAAGCACGCTGTGTCTGAGGGCACCA 593207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177800976105172