Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq106 122 8e-23 seq100 120 3e-22 seq99 82.4 7e-11 >seq106 Length=3132237 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| || | || |||||| || |||||||| || Sbjct 2288059 TTGCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCT 2288118 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 |||| ||| || | || ||||||||||| || ||||| |||| ||||||||||||| Sbjct 2288119 GCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGG 2288178 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 || | || |||||||||| |||||| ||||| | | | ||||| || ||| Sbjct 2288179 GGGATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCC 2288238 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718 ||||||| |||||| || || || |||| ||| Sbjct 2288239 ACCTCCAGCGTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||||| Sbjct 2288515 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2288574 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || ||||| |||| ||||||||||||| || Sbjct 2288575 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288634 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | ||||| || |||||| Sbjct 2288635 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288694 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGT 35718 |||| |||||| || || || || | ||| Sbjct 2288695 TCCAGCGTGATGGTCTTGCCAGTGAGAGT 2288723 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | ||| |||||| || |||||||| |||||| Sbjct 2288914 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2288973 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| || || || || | ||||||||||| | ||| Sbjct 2288974 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 2289033 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||| | | || | | ||||| || |||||| Sbjct 2289034 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACC 2289093 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGT 35718 || | ||||| || || || |||| ||| Sbjct 2289094 TCAAGGGTGATGGTCTTGCCAGTCAGAGT 2289122 >seq100 Length=2336451 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||||| Sbjct 981220 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981161 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| ||||||||||||| |||| Sbjct 981160 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 981101 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| |||||| ||||| | | | ||||| || |||||| Sbjct 981100 ATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 981041 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGT 35718 |||| ||||| || || || || | ||| Sbjct 981040 TCCAGTGTGATGGTCTTGCCAGTGAGAGT 981012 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || ||||| || | || |||||| || |||||||| |||||| Sbjct 981627 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981568 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || ||||| |||| ||||||||||||| ||| Sbjct 981567 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 981508 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | ||||| || |||||| Sbjct 981507 ATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACC 981448 Query 35690 TCCACCGTGATCGTTTTACCCGT 35712 |||| ||||| || || || || Sbjct 981447 TCCAGGGTGATGGTCTTGCCAGT 981425 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||||| || || | || ||||||||||| || ||||| Sbjct 980783 CTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAA 980724 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||||| ||| | || |||||||||| |||||| ||||| | Sbjct 980723 GATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTCACGTT 980664 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCA 35714 | | ||||| || |||||||||| ||||| || || || |||| Sbjct 980663 CTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTCTTGCCAGTCA 980614 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | || ||||| || | || |||||| || |||||||| ||||| Sbjct 982034 TCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981975 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 || || || |||| ||||||||||| || ||||| |||| ||||||||||||| || Sbjct 981974 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 981915 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||||| |||||| ||||| | | | ||||| || ||||| Sbjct 981914 GATTCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981855 Query 35689 CTCCACCGTGATCGTTTTACCCGT 35712 ||||| ||||| || || || || Sbjct 981854 CTCCAGGGTGATGGTCTTGCCAGT 981831 >seq99 Length=2590953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35548 CTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATAT 35607 ||| || ||||| || ||||||| || || ||| || ||||||||||| ||||| || Sbjct 315549 CTTCTGGATGTTATAGTCGGCCAGGGGGCGGCTGTCCTCTAGCTGCTTACCGGCAAAGAT 315490 Query 35608 CAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGC 35667 || |||| |||||||| || | || |||||||||| || ||| ||| | | | Sbjct 315489 CAGGCGCTACTGGTCCGGGGGGATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTCTC 315430 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | ||||| || |||||||||| ||||| || || || || Sbjct 315429 GATGGTGTCAGATGACTCCACCTCCAAGGTGATGGTCTTGCCGGT 315385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793002698480