Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq18 843 0.0 seq17 540 1e-148 seq93 91.5 2e-13 >seq18 Length=145863 Score = 843 bits (934), Expect = 0.0 Identities = 780/986 (79%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 |||||| || ||||| || || | ||||| | || |||||||||| ||||| || Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 ||||| ||||| | | |||||||| ||||| ||||| |||| || || ||||| | Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | ||||| ||||| || || ||||| || || || | ||||| || | || ||||||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 ||||||| |||||||| |||||||||| ||||||||||| ||||| ||||||||||| | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| || || |||||||| ||||| || ||||||||||||| |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 ||| |||||| | | ||||| | ||| ||||| |||||||||||||| |||| || Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 ||||||| ||||| ||||||||| |||||| || ||||| ||||| || || || | || Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 158094 CAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158153 | |||||| | |||| ||| ||||||||||||| ||||| |||| ||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 158154 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158213 | || || ||||| |||| |||| |||| |||||||| || ||||||||||||||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 158214 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158273 | ||||| ||||| ||||||||||| || |||||||| || |||||||| |||||||| | Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 158274 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 158333 | ||| || ||||| ||||| | |||||||| ||||| | || ||| ||| | Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 158334 GTTATAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCG 158393 |||| || ||||||||||||||||| || |||||||| ||||| || || || ||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 158394 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 158453 ||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||||||| Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 158454 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 158513 |||| |||||||| || || |||||||| || || ||||| | || || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 158514 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 158573 |||| ||||| ||||||||||||||||| | | || ||| ||||| || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 158574 CCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158633 | |||| || | | ||||| || |||||||||||||| ||||| || | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 158634 CACACAACTTCCCACTGGATCTTGCT 158659 |||||||||||||||| || |||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 540 bits (598), Expect = 1e-148 Identities = 739/1024 (72%), Gaps = 16/1024 (2%) Strand=Plus/Minus Query 159376 TGGTTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 159435 |||||||||| | ||||||||| | || || || ||||| || || || |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 159436 GGACTCCTACTTCTTCCC-ACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGAC 159494 || || |||| |||||| || ||||| | || | || || ||| | || || || || Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 159495 TTTTATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATT 159553 || | || ||||||||| || || ||||| ||||| ||| | ||||| ||| | || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTT 87452 Query 159554 TTCTCACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACT 159611 | | || ||||| || ||||| || || | |||||||| || | || ||| || Sbjct 87451 CT-TAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CT 87395 Query 159612 TTGGGGTCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTC 159671 ||||| |||||| | ||||| ||||| |||||||| || | || || | ||| | Sbjct 87394 ATGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGC 87335 Query 159672 CTTTGTTGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAAT 159731 || || ||| | || ||||| || || || || || ||||||||||| || |||||| | Sbjct 87334 TTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACT 87275 Query 159732 TGCTCGTCTAGTTGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 159787 ||| | | |||| | ||||||||||| |||||||| ||||| | ||||||| Sbjct 87274 TGCAAGA----TCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTG 87219 Query 159788 CTGTTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCAC 159847 |||| || || || |||||||||||||| |||| || || ||||||||||| | Sbjct 87218 CTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGC 87159 Query 159848 CTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACT 159907 |||| || || ||||| |||||||| |||| | | ||| | || ||||||||||||| Sbjct 87158 CTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACT 87099 Query 159908 GGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGT 159967 |||| || ||||| ||||| |||||||| || || ||| | ||||||| ||||| | | Sbjct 87098 GGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTAT 87039 Query 159968 GTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACA 160027 ||||||| || || || || ||||||||||| | ||||||||||| || || |||| Sbjct 87038 GTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACA 86979 Query 160028 CATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 160087 | || || || | || || |||| |||||||| || |||||||| || || |||| Sbjct 86978 CTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACC 86919 Query 160088 GCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCA 160147 | || ||||| || ||||| ||||| || || || ||||| || ||||||||||| || | Sbjct 86918 GTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTA 86859 Query 160148 TGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTT 160207 || | ||||| ||||| | ||||| |||| | ||||| |||| || |||||| Sbjct 86858 TGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTC 86799 Query 160208 TCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAAT 160267 | ||| | || || || || || || || ||||| | ||||| || || ||||||| Sbjct 86798 TTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAAT 86739 Query 160268 TTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCAC 160327 | ||||| |||||||| || ||||| || | || ||||| || | || |||||||| Sbjct 86738 TCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGG 86679 Query 160328 CTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACG 160387 || || || ||||||||||| || | ||||| ||||| || |||| | || |||| Sbjct 86678 CTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACG 86619 Query 160388 CACT 160391 | || Sbjct 86618 CTCT 86615 >seq93 Length=1853137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 158841 CAGTACATTCTAGACGCTGCAGAAGAGGCAGGAGTTGATATTAACTATTCCTGTCGTGCT 158900 |||||||| || || || ||||||||||| ||| |||| | || || || || ||| Sbjct 202346 CAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCT 202287 Query 158901 GGTGCCTGTTCTTCCTGTGCTGGTAAACTTGTCAGCGGAACTGTTGACCAAAGCGATCAG 158960 ||||| || || || || || || || || || ||||| ||| ||||| || ||| Sbjct 202286 GGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAG 202227 Query 158961 TCATTCTTGGATGATGATCAGATTGCAGAA-GGATTTATCCTTACGTGTGTATCTTATCC 159019 || ||||||||||| || ||| | |||| || || ||||||| || || | || || Sbjct 202226 TCTTTCTTGGATGAGGACCAG-CAGAAGAACGGTTTCGTCCTTACCTGCGTCGCATACCC 202168 Query 159020 CACTTCTGA 159028 ||| || || Sbjct 202167 CACCTCCGA 202159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 573023240743200