Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq18 845 0.0 seq17 508 7e-139 seq93 91.5 2e-13 >seq18 Length=145863 Score = 845 bits (936), Expect = 0.0 Identities = 782/986 (79%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || ||||| || | ||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 160138 ||||| |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 160139 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160198 |||||| |||||||| |||||||| | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 160199 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 160258 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 160259 ATTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAGTGGGAACTTTCATACC 160317 || ||||||| | | ||||| | ||| || ||||| ||||||||||||||||| | || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 160318 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 160377 ||||||| ||||| || |||||| |||||| || ||||| ||||| || || || ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 160378 CTGTATTCCTCGTATATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 160437 |||||||| || | || ||| ||||||||||||| ||||| |||| ||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 160438 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATC 160497 | || || ||||| |||| |||| |||| |||||||| || ||||| ||||||||||| | Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 160498 CGTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACG 160557 | ||||||||||| || |||||||| || |||||||| || | ||||| |||||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 160558 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTACG 160617 | ||| || ||||| ||||| | |||||||| ||||| | || ||| ||| | Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 160618 GTTATAAGTTCGGTCAAGAGGAAGAGACCTACAACATCGTCGCAGCCCATGGTTACTTCG 160677 |||| || ||||||||||| ||||| || |||||||| || || || || |||||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 160678 GTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 160737 ||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 160738 CAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCA 160797 | || ||||||||||| || |||||||| |||||||||||| | || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 160798 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTCGATGGTCAAGGTCGTGTACTGAACA 160857 |||| ||||| ||||||||||||||||| | | || ||||||||| || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 160858 CCTGGGCAGACGTACTGAATCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 160917 | |||| ||| | | || ||||| |||||||||||||| ||||| || | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 160918 CACACAACTTCCCACTCGACCTCGCT 160943 |||||||||||||||| ||||| ||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 508 bits (562), Expect = 7e-139 Identities = 740/1031 (72%), Gaps = 20/1031 (2%) Strand=Plus/Minus Query 161685 TGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCT 161744 |||||||| | | || |||||| | || || || || || || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 161745 GGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACAAC 161803 || || | || |||||| || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 161804 TTTCGCAACGAGCTGGTATACCCATGGTCTCGCTAGTTCCTATCTTGAGGG-TGCAAACT 161862 |||| || ||||| || ||||| || || ||||| || | || || ||||| || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CT 87453 Query 161863 TTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC-TC 161921 | | ||||| | ||| |||||||| || |||||||| || || || ||| | Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCA-TTGTTGTTCCTA 87394 Query 161922 TGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGG-GTCCAACTTGGG-GGACTCTGGA 161979 ||||| |||||||| ||||| || || |||||| ||| | ||||| || || ||| Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTC--AGTTGGGTGGTCTGTGGG 87336 Query 161980 ATTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAAC 162039 ||| || || | ||||||||||| || || ||||| || ||||| || |||||||||| Sbjct 87335 CTTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAAC 87276 Query 162040 TGGCACGTCTTATTGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATT 162095 | ||| | || |||| | ||||| ||||| |||||||| ||||| | |||||| Sbjct 87275 TTGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATT 87220 Query 162096 GCTGTTTTTGTCAGCGTCTTCCTTATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCT 162155 ||||| || || |||||||||||||| || ||||| || || | ||||| || || Sbjct 87219 GCTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCG 87160 Query 162156 CCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTTCTTC-AAGGATTCCATAA 162214 || |||||| || || |||||||| |||| | | ||||||| |||| ||||| || Sbjct 87159 CCTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCT-TTTCTTCCAAGGTTTCCACAA 87101 Query 162215 CTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTTCT 162274 |||||| || ||||| ||||| |||||||| || || ||| | ||||||| |||||||| Sbjct 87100 CTGGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCT 87041 Query 162275 ATCTGCTATTCACGGAGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAA 162334 || ||| |||||||||| ||||| || || || | | || ||||| || || || Sbjct 87040 ATGTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAA 86981 Query 162335 CACCTTTAAGGCGTTTGATTCGACACAGGAGGAAGAGACTTATTCTATGGTCACTGCAAA 162394 ||| || || || | | || || | |||||||| || |||||||| || || || Sbjct 86980 CACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAA 86921 Query 162395 CCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTT 162454 ||| || ||||| || ||||| ||| | || || || ||||| || ||||||||||| || Sbjct 86920 CCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTT 86861 Query 162455 CATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGC 162514 ||| | ||||| ||||| | ||||| |||| | ||||| |||| || ||||| Sbjct 86860 TATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGC 86801 Query 162515 TCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCTGA 162574 ||| ||| | || || || || || || || |||||| | ||||| || || ||||| Sbjct 86800 TCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGA 86741 Query 162575 GTTTGAAACGTTCTACACTAAGAACATTCTGCTCAATGAAGGACTACGTGCATGGTTAGC 162634 || || || |||||||| || |||||||| || || ||||| | | |||||| | || Sbjct 86740 ATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGC 86681 Query 162635 ACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAA 162694 || ||||| || ||||| || || | |||||||| || ||| | || | || || Sbjct 86680 GGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 86621 Query 162695 CGCCCTTTAAT 162705 ||| ||||||| Sbjct 86620 CGCTCTTTAAT 86610 >seq93 Length=1853137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 161121 ACCAGTACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTG 161180 |||||||||| | ||||| ||||||||||| ||| |||| | || || || || | Sbjct 202348 ACCAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCG 202289 Query 161181 CTGGTGCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACC 161240 ||||||||||||| || || || || || | | || || |||||||| |||| Sbjct 202288 CTGGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACC 202229 Query 161241 AGTCCTTCTTGGATGATGACCAG 161263 |||| ||||||||||| |||||| Sbjct 202228 AGTCTTTCTTGGATGAGGACCAG 202206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559503258657200