Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq18 861 0.0 seq17 535 6e-147 seq93 89.7 8e-13 >seq18 Length=145863 Score = 861 bits (954), Expect = 0.0 Identities = 763/951 (80%), Gaps = 2/951 (0%) Strand=Plus/Minus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAACT 174554 || || |||||| | |||||||| |||||||||||||| ||||| | ||| | |||||| Sbjct 120604 AACCGCCTTTACATTGGTTGGTTTGGTGTTCTAATGATCCCTACTCTTTTAACTGCAACT 120545 Query 174555 GTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||| ||||||||||| || || | ||| || || || |||||||| || |||||||| Sbjct 120544 -TCTGTGTTCATTATCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGTATCCGTGA 120486 Query 174614 ACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAG 174673 || ||| | ||||| || | || || ||||||||||| |||||||| |||||||||| Sbjct 120485 GCCTGTATCAGGTTCTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTTGTTCCTAC 120426 Query 174674 TTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATG 174733 ||||||||||| ||||| |||||||||||||| |||||||| || |||| |||||||| Sbjct 120425 ATCAAACGCAATTGGTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTTGACGAATG 120366 Query 174734 GCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGC 174793 ||| |||||||||||||||| ||||||| | || | |||||| | | || || | | Sbjct 120365 GCTTTACAACGGTGGTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTG 120306 Query 174794 CTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGT 174853 ||| ||||| |||||||||||||| |||| |||||||| ||| | || |||||| ||| Sbjct 120305 CTACATGGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGT 120246 Query 174854 AGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCA 174913 ||| |||||||||||||||||||| ||| | || |||||| | |||| ||| ||||||| Sbjct 120245 AGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCTATCGGTCA 120186 Query 174914 AGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACATGTTGGT 174973 ||||||||||||||| | ||||| |||||||| || ||||| ||||||| |||| | || Sbjct 120185 AGGTTCATTCTCAGATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACTTCATGATTGT 120126 Query 174974 CTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCGCAGGTGT 175033 |||||||| || || |||||| | |||||||| ||||||||| | || || || ||||| Sbjct 120125 TTTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGT 120066 Query 175034 CTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCACTTGTCCG 175093 |||||||||||| | |||||||| ||||| ||||| || || || ||||||||| |||| Sbjct 120065 GTTCGGTGGTTCACTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTTCACTTATCCG 120006 Query 175094 TGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCAAGAAGAAGAGAC 175153 ||| || ||||| | || ||| ||| ||||||||| ||||| ||||||||||| || Sbjct 120005 TGAAACTACTGAGAACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAAC 119946 Query 175154 CTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATT 175213 || ||||| || || || || || ||||| |||||| | |||||||||||||||||||| Sbjct 119945 TTACAACATTGTTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATT 119886 Query 175214 CAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGTGGGTATCTGGTT 175273 ||||||||| || ||||| ||||||||| | || || ||||| || || ||||||||||| Sbjct 119885 CAACAACTCTCGTTCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTT 119826 Query 175274 CACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTC 175333 || || |||||| | || || |||||||||||||| || || ||||||||||||||||| Sbjct 119825 TACTGCTCTTGGTATCTCTACTATGGCATTCAACCTTAACGGATTCAACTTCAACCAGTC 119766 Query 175334 TGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCTTAACAGAGCTGG 175393 ||| | ||| |||||| | || | ||||| |||| || | | ||| | || Sbjct 119765 AGTTGTAGACTCTCAAGGTCGCGTTATCAACACTTGGGGTGACATCATCAACCGTGCCAA 119706 Query 175394 TCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACTAGA 175444 ||||| |||||||||||||| || ||||| |||||||||||||||||||| Sbjct 119705 CCTTGGTATGGAAGTAATGCACGAAAGAAACGCACACAACTTCCCACTAGA 119655 >seq17 Length=88650 Score = 535 bits (592), Expect = 6e-147 Identities = 735/1012 (73%), Gaps = 28/1012 (3%) Strand=Plus/Minus Query 175863 GAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATTACTACTTCTT 175922 || |||||| | | | | || | ||| | || ||||||||||||| | |||| ||| Sbjct 87615 GATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACT-CTT 87557 Query 175923 CCC-ACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGTCACGAGTTG 175981 ||| || ||||| ||||| | || |||||| | || || || || || || || ||| Sbjct 87556 CCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCTTG 87497 Query 175982 GTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCGGCTG 176040 |||||| ||||| ||||| ||| || | || || ||| ||||| | ||||| || | Sbjct 87496 GTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTTCTTAACAGCAGCCG 87438 Query 176041 TCTCGACTCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAATC 176098 | || ||||| || | |||||||| || | || ||| || ||||| ||||| | Sbjct 87437 TTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAGGC 87380 Query 176099 TCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCA 176158 || || ||||| || ||| || | || || || ||| | || || ||| | || Sbjct 87379 ACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTCGTAGCTTTACA 87320 Query 176159 CGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGG 176218 |||||||| || || ||||| || ||||| || ||||||||||| |||||| | || Sbjct 87319 TGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAGA----TCGG 87264 Query 176219 TA----TCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCAGTG 176274 || | ||||| |||||||||||||| ||| | ||||| ||||| || || | Sbjct 87263 TAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTATCAG 87204 Query 176275 TGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGG 176334 | || ||| | || || | || ||||| |||||||||||| || ||||||||| | Sbjct 87203 TCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTGTAG 87144 Query 176335 CAGCAATCTTTAGATTCCTATTGTTT-CTTC-AGGGTTTCCACAACTGGACACTGAACCC 176392 | |||||||| |||| |||| ||| |||| | ||||||||||||||||| || ||||| Sbjct 87143 CGGCAATCTTCCGATT--TATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACCC 87086 Query 176393 CTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGG 176452 ||||| |||||||| || || ||| | ||||||| ||||| |||| |||||| || || Sbjct 87085 TTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACGG 87026 Query 176453 CGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAAC-AACACCTTCACTGCGT 176511 | || || || || || || | ||||||||| || | | | ||||| ||| ||| | Sbjct 87025 AGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGA-CGGTGCGAACACTTTCCGTGCAT 86967 Query 176512 TCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGC 176571 || | | ||||| | |||||||| || || ||||| || || ||||| || ||||| | Sbjct 86966 TCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCAC 86907 Query 176572 AAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCC 176631 ||||||| || || || || || || ||||||||||| ||||||||| | ||||||| Sbjct 86906 AAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCC 86847 Query 176632 CTGTCATGGGTCTTTGGGTCTCAAGT---ATTGGCATCATTGGGCTTGCTCTTAATCTTC 176688 |||| | ||||||||| | ||| ||||| | || || ||||||||||| | | Sbjct 86846 CTGTAACTGGTCTTTGGATG---AGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTAC 86790 Query 176689 GTGCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTT 176748 | || ||||| ||||| |||||||| | ||||| || || ||||| || || |||| Sbjct 86789 GAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTT 86730 Query 176749 TCTACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATC 176808 |||||||||| ||||| ||||| |||||||| | |||||||||||||| || ||| | Sbjct 86729 TCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACC 86670 Query 176809 AACCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 | |||||||| | ||||||||||||| || ||| |||| | || ||||| Sbjct 86669 AGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 86618 >seq93 Length=1853137 Score = 89.7 bits (98), Expect = 8e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 171141 CAATACATCCTAGATGCCGCAGAGGAAGCGGGTGTATATCTCCCATATTCATGTAGAGCT 171200 || |||||||| ||||||||||| || || || | | |||||||| ||||| | ||| Sbjct 202346 CAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCT 202287 Query 171201 GGTGCTTGTTCATCCTGTGCAGGTAAGATTGTATCTGGAAAGGTGAATCAAGAAGACCAG 171260 |||||||| ||||| || || || ||| | || || | ||| | || ||||||| Sbjct 202286 GGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAG 202227 Query 171261 TCATTCTTAGATGATGATCAGATCGAAGCA-GGTTTCG 171297 || ||||| ||||| || ||| |||| | ||||||| Sbjct 202226 TCTTTCTTGGATGAGGACCAG-CAGAAGAACGGTTTCG 202190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729928632843280