Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq18 834 0.0 seq17 493 2e-134 seq93 82.4 9e-11 >seq18 Length=145863 Score = 834 bits (924), Expect = 0.0 Identities = 779/985 (79%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || ||||| || | |||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGCAACAA 178027 ||||| |||||||| || |||||||| || || | ||||| || | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 178028 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 178087 |||||| |||||||| |||||||| | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 178088 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 178147 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 178148 ATTTCACTTCCTCATTGGTATCTA-TGCATACATGGGACGTGAGTGGGAACTTTCATACC 178206 || ||||||| || | || || | ||| |||||||| ||||||||||||||||| | || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 178207 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCTCCAGTAGCAGCAGCATCGG 178266 ||||||| ||||| || |||||| |||||| |||||||| ||||| ||||| || | | Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 178267 CAGTATTCCTGGTCTATCCTTTCGGTCAAGGTTCATTTTCTGACGCAATGCCACTTGGCA 178326 | |||||| | |||| ||| |||||||||||||||| || || | ||||| | || | Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 178327 TCTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAACACAACATTCTGATGCACC 178386 | || || || ||||||| |||| ||||||||||||| || |||||||| || ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 178387 CCTTCCACATGTTGGGTGTCGCAGGTGTATTCGGTGGTTCACTGTTCAGTGCAATGCACG 178446 | ||||||||| | ||||| || ||||| |||||||||||||| ||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 178447 GTTCTTTGGTTACATCTTCACTCGTTCGTGAAACGACTGAAACAGAATCACAGAACTATG 178506 ||||| | || || |||||||| | |||||||| ||||| | |||||| ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 178507 GTTATAAGTTCGGACAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 178566 |||| || ||||| ||||||||||| || |||||||| ||||| ||||| || ||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 178567 GTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCG 178626 ||||| | ||||||||||| ||||||||||||||||| |||||||| ||||||||||| | Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 178627 CAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTA 178686 | || |||||||||||||| |||||||| || || || || | || |||||||| | Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 178687 ACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGACAAGGACGTGTCCTCAACA 178746 |||| || |||||||||||||||||||| | | ||| ||||| || || |||||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 178747 CATGGGCAGACGTGCTCAACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACG 178806 | |||| ||| | ||||||||||| || || |||||||| |||||||| | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 178807 CGCACAACTTCCCGCTTGATCTTGC 178831 | ||||||||||| || || ||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGC 119649 >seq17 Length=88650 Score = 493 bits (546), Expect = 2e-134 Identities = 729/1022 (71%), Gaps = 18/1022 (2%) Strand=Plus/Minus Query 179220 TGGTTCGATGTCCTGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCT 179279 ||||| |||| | || |||||| | || || || ||||| || || || |||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 179280 GGACTCCTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGC 179338 || || |||| |||||| || ||||| ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 179339 TTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACT 179397 || ||||| ||||||||| || || ||||| ||||| || | || || ||| |||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACT 87453 Query 179398 TTCTTACGGCAGCTGTCTCGACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACT 179455 | | || ||||| || || || || || | |||||||| || | || ||| || Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CT 87395 Query 179456 TTGGGGTCCTGAGTCTCAGGG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGA 179514 ||||| |||||| | || || || ||| | || ||||| || | || || || ||| Sbjct 87394 ATGGGGGCCTGAGGCACAAGGTGACTTTACT-CGCTGGTGTCAGTTGGGTGGTCTGTGGG 87336 Query 179515 ATTTCGTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAAC 179574 |||||| ||| | || |||||||| || || ||||| || ||||| | || ||||||| Sbjct 87335 CTTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAAC 87276 Query 179575 TTGCTCGCCTGATTGGTA----TCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATT 179630 |||| | || |||| | | |||||||| || ||||| || || | |||||| Sbjct 87275 TTGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATT 87220 Query 179631 GCTGTATTCGTCAGTGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCG 179690 ||||| ||||| || ||||| ||||||||||||||||| || ||||| || ||| Sbjct 87219 GCTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCG 87160 Query 179691 CCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAAC 179750 || ||||||||| ||||| |||||| | || | || ||| | || |||||||||||| Sbjct 87159 CCTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAAC 87100 Query 179751 TGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTC 179810 |||||||| ||||| ||||| |||||||| || || ||| | ||||| | ||||| || Sbjct 87099 TGGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTA 87040 Query 179811 AGTGCTATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAAT 179870 |||| || || |||| || |||||||| || | | ||||||||| || || || Sbjct 87039 TGTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAAC 86980 Query 179871 ACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAAC 179930 || || || || | | || || | |||||||| || |||||||| || || ||| Sbjct 86979 ACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAAC 86920 Query 179931 CGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTC 179990 || || ||||| || ||||| ||| | || || || ||||| || ||||||||||| || Sbjct 86919 CGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTT 86860 Query 179991 ATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCT 180050 ||| | ||||| ||||| | ||||| |||| | ||||| |||| || |||||| Sbjct 86859 ATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCT 86800 Query 180051 CTCAACCTTCGTGCTTACGATTTCGTAAGTCAGGAGATCAGAGCAGCAGAAGATCCCGAG 180110 || ||| | || || || || || || || |||||| | ||||| || || || || Sbjct 86799 CTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAA 86740 Query 180111 TTTGAGACCTTCTACACCAAGAACATTCTTCTCAATGAAGGACTACGTGCATGGTTGGCA 180170 || ||||| |||||||| || ||||||||||| || ||||| | | |||||| |||| Sbjct 86739 TTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCG 86680 Query 180171 CCAGTTGATCAACCACATGAGTCATTCGTATTCCCAGAAGAAGTTCTGCCAAGAGGTAAT 180230 | || || |||||||| | | ||||||||||| || ||| | ||| | || || Sbjct 86679 GCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAAC 86620 Query 180231 GC 180232 || Sbjct 86619 GC 86618 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 18757 GGTTGTAGCTCAGTTGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGTGGGTTCAAGTC 18816 |||||||| ||| | ||||||||| || ||||||||||| |||||| | |||||| |||| Sbjct 84418 GGTTGTAGTTCAAT-GGTTAGAGCACCGGCCTGTCACGCTGGAAGTTGCGGGTTCGAGTC 84476 Query 18817 CCATCAATCCCGTA--TGCCAAACTAGCT 18843 || |||||| |||| ||| | | ||||| Sbjct 84477 CCGTCAATCTCGTAGCTGCTACATTAGCT 84505 >seq93 Length=1853137 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 176343 CAGTATATCCTTGACGCTGCTGAAGAAGCAGGTGTAGATATCAATTACTCTTGTCGTGCT 176402 ||||| ||||| || || || ||||| || || | || || ||||| || || ||| Sbjct 202346 CAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCT 202287 Query 176403 GGTGCTTGTTCATCTTGTGCTGGCAAACTAGAGAGTGGTTCTGTTGATCAGAGTGATCAG 176462 |||||||| ||||| || || ||||| || | ||| || ||| || ||| || ||| Sbjct 202286 GGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAG 202227 Query 176463 TCTTTCCTGGATGATGATCA 176482 |||||| ||||||| || || Sbjct 202226 TCTTTCTTGGATGAGGACCA 202207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606008797037280