Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq18 845 0.0 seq17 511 5e-140 >seq18 Length=145863 Score = 845 bits (936), Expect = 0.0 Identities = 782/986 (79%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || ||||| || | ||||| ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 ||||| |||||||| || |||||||| || || | ||||| || | || |||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 |||||| |||||||| ||||| || | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| || |||||||| || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 158678 CTTTCACTTCCTTATCGGCATCTA-TGCATATATGGGACGTGAATGGGAACTTTCATACC 158736 | ||||||| | | ||||| | ||| || ||||| ||||| ||||||||||| | || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 158737 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTG 158796 | ||||| ||||| || |||||| |||||| || ||||||||||| || || || ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 158797 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158856 |||||||| || |||| ||| ||||||||||||| ||||| |||| ||||||| | |||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 158857 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158916 | || || ||||| |||| |||| |||| |||||||| || ||||||||||||||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 158917 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATG 158976 | ||||| ||||| ||||||||||| || |||||||| || |||||||| |||||||| | Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 158977 GAAGTCTCGTTACTTCCTCACTCGTTCGTGAAACGACTGAAACAGAGTCACAGAACTATG 159036 | ||| || ||||| ||||| | |||||||| ||||| | || ||| ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 159037 GTTACAAGTTCGGACAAGAAGAAGAAACATATAATATCGTCGCAGCCCATGGTTACTTCG 159096 ||||||| ||||| |||||||||||||| || || || || || || || |||||||| | Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 159097 GTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 159156 ||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||||||| Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 159157 CTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCA 159216 |||| |||||||| || || |||||||| || || ||||| | || || |||||||||| Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 159217 ACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 159276 |||| ||||| ||||||||||||||||| | | || ||| ||||| || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 159277 CCTGGGCAGATGTACTGAACCGTGCAGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 159336 | |||| || | | |||||||| || ||||||||||| ||||| || | |||| Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 159337 CACACAACTTCCCACTCGACCTTGCT 159362 |||||||||||||||| ||||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 511 bits (566), Expect = 5e-140 Identities = 740/1031 (72%), Gaps = 20/1031 (2%) Strand=Plus/Minus Query 159896 TGGTTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCT 159955 |||||||| | | || |||||| | || || || || || || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 159956 GGACTTCTTCTTCTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAAC 160014 || || | || |||||| || ||||| ||||| | || || ||| | || ||||| || Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 160015 TTTCGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAACT 160073 |||| || ||||| || |||||||| || ||||| || | || || ||||| || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CT 87453 Query 160074 TTCTTACAGCGTCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC-TC 160132 | | ||||| | ||| |||||||| || |||||||| || || || ||| | Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCA-TTGTTGTTCCTA 87394 Query 160133 TGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAA 160191 ||||| |||||||| ||||| || ||| || | ||| || | || || || ||| Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGC 87335 Query 160192 TTTTGTGGCACTCCATGGTGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACT 160251 ||| || || | ||||||||||| || || ||||| || ||||| || ||||||||||| Sbjct 87334 TTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACT 87275 Query 160252 GGCACGTCTCATCGGTA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTG 160307 ||| | ||||||| | ||||||||||| |||||||| ||||| | ||||||| Sbjct 87274 TGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTG 87219 Query 160308 CTGTCTTTGTCAGCGTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTC 160367 ||||||| || || ||||| ||||| || ||||| || || | ||||| || || | Sbjct 87218 CTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGC 87159 Query 160368 CGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACT 160427 | |||||| || || |||||||| |||| | | ||| | ||||| || ||||||| Sbjct 87158 CTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACT 87099 Query 160428 GGACGCTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCA 160487 ||||||||||||| ||||| |||||||| || || ||| | ||||| | ||||| || Sbjct 87098 GGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTAT 87039 Query 160488 GTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATA 160547 |||| || || || | || ||||||||||| || | ||||||||| || || || | Sbjct 87038 GTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACA 86979 Query 160548 CCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACC 160607 | || || || | | || || | |||||||| || |||||||| || || |||| Sbjct 86978 CTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACC 86919 Query 160608 GCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCA 160667 | || ||||| || ||||| ||| | || || || ||||| || ||||||||||| || | Sbjct 86918 GTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTA 86859 Query 160668 TGTTGTTTGTGCCTGTTATGGGTCTTTGGA--CATCCAGTATTGGCATTATTGGTCTTGC 160725 || | ||||| ||||| | |||||||||| | || ||||| |||| || ||||| Sbjct 86858 TGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCA--ATTGGTGTTATCGGACTTGC 86801 Query 160726 TCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCAGA 160785 ||| || | || || || || || || |||||||| | ||||| || || || || Sbjct 86800 TCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGA 86741 Query 160786 ATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTAGC 160845 ||| ||||| |||||||| || ||||| || || || ||||| | | |||||| | || Sbjct 86740 ATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGC 86681 Query 160846 ACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGCAA 160905 || ||||| || ||||| || || | |||||||| || ||| | || | || || Sbjct 86680 GGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 86621 Query 160906 CGCCCTTTAAT 160916 ||| ||||||| Sbjct 86620 CGCTCTTTAAT 86610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552472867972480