Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq18 832 0.0 seq17 529 2e-145 seq93 100 3e-16 >seq18 Length=145863 Score = 832 bits (922), Expect = 0.0 Identities = 777/985 (79%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 ||||| || ||||| || ||| | || || | || |||||||||| ||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| | | |||||||| ||||| ||||| | || || || || ||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || || || || || |||||||| || || | ||||| || | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 |||||| |||||||||||||| || | ||||||||||||||||| ||||||||||| || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| || ||||| || || ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | ||||| | ||| ||||| ||||||||||||||||||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | |||| ||||||||||||||| ||| || |||||||||||||| || ||||| | ||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 |||||| || |||| ||| ||||||||||||| ||||| |||| ||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 || || ||||| |||| |||| |||| |||||||| || |||||||||||||||||||| Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 179459 ||||| ||||| ||||||||||| || |||||||| || |||||||| ||||||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 179460 AAGTCTCGTTACTTCCTCGCTTGTTCGTGAAACAACTGAGACAGAGTCACAGAACTATGG 179519 ||| || ||||| || ||| | |||||||| ||||||| || ||| ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 179520 TTATAAGTTCGGACAAGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGG 179579 ||| || ||||| ||||||||||| || || ||||| || || ||||| || ||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 179580 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGC 179639 |||| | ||||||||||| || || || |||||||| || || | |||||||||||||| Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 179640 TGCGTGGCCGGTTGTCGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAA 179699 ||| ||||| || || || |||||||| ||||||||||| | || || ||||| ||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 179700 CCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACAC 179759 ||| ||||| ||||||||||||||||| | | ||| |||||| || || | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 179760 ATGGGCGGACGTATTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGC 179819 |||| ||| | | |||||||| | ||||||||||| ||||| || | ||||| Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 179820 ACACAACTTCCCACTCGACCTTGCT 179844 ||||||||||||||| ||||||||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 529 bits (586), Expect = 2e-145 Identities = 739/1023 (72%), Gaps = 20/1023 (2%) Strand=Plus/Minus Query 180018 TGGTTCGATGTCCTGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCT 180077 ||||| |||| | || |||||| | || || || ||||| || || ||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 180078 GGACTACTACTTCTTCCC-ACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGC 180136 || || |||| |||||| || ||||| ||||| | || || ||| | || || || | Sbjct 87570 GGTCTGTTACT-CTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 180137 TTTTGTCACGAGTTGGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACT 180195 || || || ||||||||| || || ||||| ||| || | ||||| ||| |||| Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACT 87453 Query 180196 TTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGGGTCATTC--TCTTCTTCTACT 180253 | | || ||||| || || || || || || |||||||| || | || ||| || Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CT 87395 Query 180254 TTGGGGTCCTGAGTCTCAGGG-GAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGA 180312 ||||| |||||| | || || || ||| | || ||||| || | || || || ||| Sbjct 87394 ATGGGGGCCTGAGGCACAAGGTGACTTTACT-CGCTGGTGTCAGTTGGGTGGTCTGTGGG 87336 Query 180313 ATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAAC 180372 |||||| ||| | || |||||||| || || ||||| ||||||||||| |||||||||| Sbjct 87335 CTTTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAAC 87276 Query 180373 TGGCACGTCTTATTGGTA----TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATC 180428 | ||| | || |||| | ||||||||||| |||||||| ||||| | ||||| Sbjct 87275 TTGCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATT 87220 Query 180429 GCTGTATTTGTCAGCGTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCT 180488 ||||| || || || || || ||||| || |||| || || | ||||||||||| Sbjct 87219 GCTGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCG 87160 Query 180489 CCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAA 180547 || ||||| ||||| |||||||| |||| | || ||||||| | ||||||||||| Sbjct 87159 CCTAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCT-TTTCTTCCAAGGTTTCCACAA 87101 Query 180548 CTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCT 180607 |||||| || ||||| ||||| |||||||| || || ||| | ||||||| ||| | || Sbjct 87100 CTGGACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCT 87041 Query 180608 ATCAGCAATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAA 180667 || ||||| || || | ||| || |||||||| || | ||||||||| || || || Sbjct 87040 ATGTGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAA 86981 Query 180668 CACCTTTAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAA 180727 ||| || ||||| | ||||||||| || || || ||||||||||| || || || Sbjct 86980 CACTTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAA 86921 Query 180728 CCGCTTCTGGTCGCAGATCTTCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTT 180787 ||| || ||||| || ||||| ||| | || || || ||||| || ||||||||||| || Sbjct 86920 CCGTTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTT 86861 Query 180788 CATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGC 180847 ||| | ||||| ||||| | ||||| |||| | ||||| |||| || ||||| Sbjct 86860 TATGCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGC 86801 Query 180848 TCTCAACCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGA 180907 ||| ||| | || || || || || || ||||||||| | ||||| || || ||||| Sbjct 86800 TCTTAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGA 86741 Query 180908 GTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGC 180967 |||||||| |||||||| || ||||| || | || ||||| | | |||||| |||| Sbjct 86740 ATTCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGC 86681 Query 180968 ACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAA 181027 || || || ||||| ||||| | | ||||| || || ||| ||||| | || || Sbjct 86680 GGCTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 86621 Query 181028 CGC 181030 ||| Sbjct 86620 CGC 86618 >seq93 Length=1853137 Score = 100 bits (110), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 177387 CAGTACATCCTCGACGCCGCTGAAGAAGCAGGTGTTGATATTAATTACTCATGCCGCGCT 177446 |||||||||||||| ||||| ||||| || || |||| | ||||||||||||||| Sbjct 202346 CAGTACATCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCT 202287 Query 177447 GGTGCTTGTTCATCCTGTGCTGGTAAACTTGAGAGTGGTAGTGTAGATCAAAGCGATCAA 177506 |||||||| ||||| || || || || || | ||| || ||| || || || || Sbjct 202286 GGTGCTTGCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAG 202227 Query 177507 TCGTTCTTGGATGACGATCAAATGGAGTCAGGATTTATTCTGACCTGTGTGTCATATCCC 177566 || ||||||||||| || || | || || || | || ||||| || |||| ||| Sbjct 202226 TCTTTCTTGGATGAGGACCAGCAGAAGAACGGTTTCGTCCTTACCTGCGTCGCATACCCC 202167 Query 177567 ACC 177569 ||| Sbjct 202166 ACC 202164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610328791313280