Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq106 111 2e-19 seq102 100 4e-16 seq2 93.3 5e-14 seq87 91.5 2e-13 >seq106 Length=3132237 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || |||||||| || |||||||| || || |||||| || || |||||||| Sbjct 1547902 GTGCAGGCCCTCGTCGCGCGAGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGCAG 1547961 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| |||| ||| |||||||| || Sbjct 1547962 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCGCTGAAGTGGATGCCCTCCACGCA 1548021 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 |||||||| | || ||||| |||||| || || | || | | ||| | | ||| Sbjct 1548022 GGCGAACGCCACCAGGCGCTCCGCAAAGCTGCTGG-CGCTGC--CGATCCAGTGCTGCGC 1548078 Query 130207 CCACTGCGCCTTTTT 130221 |||||||||||| || Sbjct 1548079 CCACTGCGCCTTCTT 1548093 >seq102 Length=2901463 Score = 100 bits (110), Expect = 4e-16 Identities = 113/149 (76%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| || || ||||||| || Sbjct 1633770 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCGTGCATGAGGCC 1633711 Query 130087 CCGCTTCTTCAACCAGAAAATCGC-ACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 |||||||| | |||||| | ||| || || ||| ||||||||| |||||||| | Sbjct 1633710 GCGCTTCTTGAGCCAGAAGA-CGCTGCAGAAGCTGCCGCTGAAGAAGATGCCCTCCACGC 1633652 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || |||| | || ||||| |||||| Sbjct 1633651 AGGCCCACGCCACCAGCCGCTCCGCAAAG 1633623 >seq2 Length=534433 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118704 GGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATA 118763 || || || ||||| |||| ||| || |||| ||||| || | |||||||| | | Sbjct 280812 GGGAGAGCAATTGATGCCAAATTGCATACAGCTGTCTCTTCAGCAGATGTGTACTCCACA 280753 Query 118764 ATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 118823 || || ||||| | || | ||| |||||||||| |||| ||||||||||| || Sbjct 280752 ATCTCAGTGCAGAGATTGCTGCACTTGATGGTGCCCAGATTCTGCTGATTTGACTTCCTG 280693 Query 118824 TTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || || | |||||||| ||||||||||| | || ||||| Sbjct 280692 TTGCAGGAGTCCTTGTAGAGCATGTATGGGTTGCCTGTCTC 280652 >seq87 Length=36794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 127/176 (72%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 142163 CTCAACGGTCAAGACCGATTCAAGGCCCAAAAGGGTAAGTACTTCAACCAAGTGCAAGCG 142222 |||||||| || ||| | ||| | | | ||| ||||||||||| ||||| | Sbjct 17413 CTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCTGGTGCAGCCC 17354 Query 142223 TACAACCACCACTCTGGC-TGCCCATACCCAGGTGTGT--ACGCGTACTCCTTCGCGCTC 142279 ||| | |||||| | | | |||| ||| | | | ||| ||||||||||| ||| Sbjct 17353 TACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTCCTTCGGACTC 17294 Query 142280 AAGCCAGAAGAACACCAACCAACTGGCACGTGCAACTTCTCCCGCATCGACAACGC 142335 ||||| || || ||||| || | || || |||||||||||||||||||||||||| Sbjct 17293 AAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGACAACGC 17238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434380573360