Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq87 138 3e-27 >seq87 Length=36794 Score = 138 bits (152), Expect = 3e-27 Identities = 147/192 (77%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 177866 AGTGTAGCATTGTCAATGCGTGAGAAATTGCAGGTTCCTGATGGCTGGTGCTCCTCGGGC 177925 || || || ||||| ||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct 17232 AGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGCTCCTCGGGC 17291 Query 177926 CGAAGGGCGAAGGAGTAGAGATTGATACCAGTG--TCAGGGGAT-CGGGTGTGGTGCTGG 177982 || |||||||||| | ||||| || || | |||||| ||||||||||||| Sbjct 17292 TTGAGTCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGGATGTTGGTGTGGTGCTGG 17351 Query 177983 TAGGGCTGAACAAGGTCGAAGTATGTACCCTCACGCTCTGAGAAGCGGTCCTGACCATTA 178042 |||||||| || |||| |||||| | ||| |||||| ||| | ||| || || || Sbjct 17352 TAGGGCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAACCTGTCGTGGCCGTTG 17411 Query 178043 AGCTGAAGTTTG 178054 ||||| || ||| Sbjct 17412 AGCTGCAGCTTG 17423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252342095118