Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq57 138 1e-27 seq87 118 1e-21 seq102 107 2e-18 seq106 105 7e-18 >seq57 Length=1368 Score = 138 bits (152), Expect = 1e-27 Identities = 497/764 (65%), Gaps = 30/764 (4%) Strand=Plus/Minus Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGAT 19534 ||||| || || || ||||| |||||| |||||||||||||||| |||||| | || Sbjct 1344 GGCAAGCGAAATGGGAGCTTCGCAATCTACATCGAGCCATGGCACGCAGACGTCTTCGAC 1285 Query 19535 TTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACG 19594 ||||| || || ||| || ||||||||||||| ||| ||||| |||||| Sbjct 1284 TTCCTGGACCTCAAGAAGAATCACGGTGACGAGGAGAGGCGGGCGCGCGATCTCTTCTAC 1225 Query 19595 GCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAG--AAGGACGAAGAATGGCACC 19652 ||| ||||| | |||||||| ||||||||| || || | |||| ||||| || Sbjct 1224 GCCATGTGGGTACCGGACCTCTTCATGGAGCGCGTGCAGTCAGGGAC--TCAATGGAGCC 1167 Query 19653 TGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGT 19712 ||||| ||| || || || || || || |||| || ||| ||||| | Sbjct 1166 TGATGGACCCCAGCGCGTGTCCCGGGCTCCCTGACGCGGTGGGGCAGGACTTCAAGCTGC 1107 Query 19713 TGTACCGGACTTACGTAGC--CCAG--GGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGAC 19768 ||||| | ||||| || | || || ||||| | |||| || | |||| Sbjct 1106 TGTACGAGGGTTACGAGGCGTCGAGTAGGTGGGTTCGCCA----GGTCGACGCAC-GGAC 1052 Query 19769 GTCTG-GGACCGCG-TCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACA 19826 | ||| ||| |||| |||| ||| |||||||||| ||||||||| || || || Sbjct 1051 G-CTGTGGAACGCGATCCTGGTCTCGCAGATCGAGACCGGGACACCGTACCTGCTCTTCA 993 Query 19827 AGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACC 19886 |||| ||| ||| ||||| || |||| ||| | || | ||| ||||| | Sbjct 992 AGGATGCCTGCAACCGGAAGTCCAACCAGAGCAACTTGGGGACCATCCGCAGCTCCAATC 933 Query 19887 TGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGT 19946 |||| | ||| || || || || | || | ||||| || ||||| || || | Sbjct 932 TGTGCAGTGAGATTCTGCAGTACTCGAGCCCCGCAGAGACGGCGGTGTGCAACCTCAGCT 873 Query 19947 CCCTGTGCCTGCCGACTTTCGTCAAGGCC------TCCTCCTTCGACTTTGCCAAATTGT 20000 | | ||||||||| |||| | |||| | ||||||||| | || Sbjct 872 CGATCGCCCTGCCGACATTCGCGAGGGCCGAGGATTGGAGCTTCGACTTCGAGGGGCTGC 813 Query 20001 ACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACC 20060 || | |||||| ||| | || ||| || ||||| || ||||| || | || | Sbjct 812 ACAACGTGACCAAGGTGGCCATGCGCAACCTGAACAAGGTGATCGACATCAATTACTATC 753 Query 20061 CGA---CCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCC 20117 ||| ||||||| | || | || |||| ||||| || ||| | | ||||| || | Sbjct 752 CGACGCCCGAGGCAGAGCTC---TCCAATAGACGCCATCGACCGGTGGGCATCGGGGTTC 696 Query 20118 AGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCC-AAGGCGCGC 20176 |||| || || ||| ||| || || | | | | ||||| || ||| ||||| | Sbjct 695 AGGGGCTTGCTGACACGTTCTGCATCCTGAGGCACCCCTTCGA-GAGCCCTGAGGCGAGG 637 Query 20177 GAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCT 20220 |||| || | |||| |||| || |||||||||| || || Sbjct 636 CAGCTGAATCGAGACATCGCCGAGACCATGTACCACGCTGCTCT 593 Score = 120 bits (132), Expect = 3e-22 Identities = 320/478 (67%), Gaps = 22/478 (5%) Strand=Plus/Plus Query 79063 AGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTA 79122 ||||||||||| |||||||| | ||||| || || | || || |||||| ||| Sbjct 878 AGGTTGCACACCGCCGTCTCTGCGGGGCTCGAGTACTGCAGAATCTCACTGCACAGATTG 937 Query 79123 GACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAG 79182 || |||||| || | ||| |||||||| |||| ||| ||||| |||||| || Sbjct 938 GAGCTGCGGATGGTCCCCAAGTTGCTCTGGTTGGACTTCCGGTTGCAGGCATCCTTGAAG 997 Query 79183 CACATGTACGGCGTCCCGGTCTCAACCTG--ACTCTTGAGAACGCCGTCC-CAGATGTCC 79239 || |||||| ||||||||||| | ||| | | | || ||| ||| ||| |||| Sbjct 998 AGCAGGTACGGTGTCCCGGTCTCGATCTGCGAGACCAG-GATCGCGTTCCACAGC-GTCC 1055 Query 79240 ---CG--GGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 || | || || |||| ||| || | || |||| | ||||| | Sbjct 1056 GTGCGTCGACCTGGCGAACCC------ACCTACTCGACGCCTCGTAACCCTCGTACAGCA 1109 Query 79295 CGTTGAAAGCCT-CCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGG 79353 ||||| ||| ||||| | | || || || || || ||| || ||| ||||||| Sbjct 1110 GCTTGAAGTCCTGCCCCACCG-CGTCAGGGAGCCCGGGACACGCGCTGGGGTCCATCAGG 1168 Query 79354 TGCCAGTCCTCGTCCTT--CTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCG 79411 ||| | |||| | || || |||||||||||||||||| | ||||| ||| Sbjct 1169 CTCCATTGA--GTCCCTGACTGCACGCGCTCCATGAAGAGGTCCGGTACCCACATGGCGT 1226 Query 79412 TGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGT 79471 |||||| ||||| ||| |||||||||| || || ||| || || || |||| Sbjct 1227 AGAAGAGATCGCGCGCCCGCCTCTCCTCGTCACCGTGATTCTTCTTGAGGTCCAGGAAGT 1286 Query 79472 CCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 | | || ||| |||||||| ||||| | ||||| ||||| || || |||||||| Sbjct 1287 CGAAGACGTCTGCGTGCCATGGCTCGATGTAGATTGCGAAGCTCCCATTTCGCTTGCC 1344 >seq87 Length=36794 Score = 118 bits (130), Expect = 1e-21 Identities = 126/169 (75%), Gaps = 12/169 (7%) Strand=Plus/Minus Query 50169 TGTGGGCCAACTACGTCTACCTGGACACTGAGGAGCGCCGCCGCTTCGCCCAGAAGGGCC 50228 |||||| ||||||||||||||||||| || ||||||||| | ||||||||| || Sbjct 17685 TGTGGGTGGACTACGTCTACCTGGACACCGACGAGCGCCGCAGGTTCGCCCAGGTCTCCC 17626 Query 50229 ACGAGTACCTGATCGAGCAGGTGCAGCACACCGGCGGTGACTCCATCACGGCCTCGGGCA 50288 |||||||||||||||||||| ||||| ||||||||| || ||| || | Sbjct 17625 ACGAGTACCTGATCGAGCAGCTGCAGTTCACCGGCGGCGAGTCCGTCTC----------- 17577 Query 50289 ACCCGGGCGCCCAGACGATCCGTCTGTCCTACAACCACCCGGTGAAGGA 50337 || | |||| | | |||||| ||| || ||||||||| ||||| || Sbjct 17576 -CCAGAACGCCAACAAGATCCGCCTGAACTTCAACCACCCCGTGAAAGA 17529 Score = 111 bits (122), Expect = 2e-19 Identities = 137/187 (73%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 50614 CAAGCTGGTGCTGAACGGCCAGGACCGCTTCAAGGAGCAGATCGGCAAGTACTTCAACCA 50673 ||||||| ||| |||||||| ||| | ||| | |||| | ||| ||||||||||| Sbjct 17423 CAAGCTGCAGCTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCT 17364 Query 50674 GTACCAGCCGTACGTGTACCACTCGGGCACGCCC---TACCCGGGTGTGTACGTGTACTC 50730 | ||||| ||| | ||||| | || ||| | | ||| | |||||||||| Sbjct 17363 GGTGCAGCCCTACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTC 17304 Query 50731 CTTCGCCCTGCAGCCGGAGGAGCACCAGCCGACCGGCACGTGCAACTTCTCTCGTATTGA 50790 ||||| || |||| |||||||||||||| |||| || ||||||||||| || || || Sbjct 17303 CTTCGGACTCAAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGA 17244 Query 50791 CAACGCC 50797 ||||||| Sbjct 17243 CAACGCC 17237 Score = 105 bits (116), Expect = 7e-18 Identities = 136/183 (74%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 49168 CAAGCTGATGCTGAACGGCACGGACCGCTTCGTCGAGCAGTCCGGTAA-GTACTTTAACC 49226 ||||||| ||| |||||| ||| | |||| ||||| ||| || |||||| |||| Sbjct 17423 CAAGCTGCAGCTCAACGGCCACGACAGGTTCGACGAGC-GTCTGGGCTCGTACTTCAACC 17365 Query 49227 AGTACCAGCCGTACCAGTACCACGAGGGC-TCGCC--GTACCCGGGCATCTACGTGTACT 49283 | ||||| |||||| ||||| | || || || | ||||||| ||||||||| Sbjct 17364 TGGTGCAGCCCTACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACT 17305 Query 49284 CCTTCGCTCTCAAGCCCGGGGAGCTCCAGCCGAGCGGCACGTGCAACTTCAGCCGGATCG 49343 |||||| |||||||||| ||||| |||||| ||| || ||||||||| ||| |||| Sbjct 17304 CCTTCGGACTCAAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCG 17245 Query 49344 ACA 49346 ||| Sbjct 17244 ACA 17242 >seq102 Length=2901463 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 59997 GCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAG 60056 || |||||||| || ||||||||| ||| ||||| | ||||||||||| ||| Sbjct 1633648 GCCTGCGTGGAGGGCATCTTCTTCAGCGGCAGCTTCTGCAGCGTCTTCTGGCTCAAGAAG 1633707 Query 60057 CGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTC 60116 || |||||||||| ||||| | |||||||||||||| || ||||| |||||||||||| Sbjct 1633708 CGCGGCCTCATGCACGGCCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTC 1633767 Query 60117 CA 60118 || Sbjct 1633768 CA 1633769 >seq106 Length=3132237 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | || || | || || || |||||||| || ||| |||| ||||| ||| Sbjct 1548048 TTTGCGGAGCGCCTGGTGGCGTTCGCCTGCGTGGAGGGCATCCACTTCAGCGGCTCCTTC 1547989 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| |||||||| ||||| | |||||||||||| Sbjct 1547988 TGCGCCATCTTCTGGCTCAAGAAGCGCCTGCTCATGCCCGGCCTCACCTTCTCCAACGAG 1547929 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || || || ||||||||||| || Sbjct 1547928 CTCATCTCGCGCGACGAGGGCCTGCA 1547903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524073204640