Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq87 132 5e-26 seq98 84.2 2e-11 seq57 84.2 2e-11 >seq87 Length=36794 Score = 132 bits (146), Expect = 5e-26 Identities = 143/188 (76%), Gaps = 5/188 (3%) Strand=Plus/Plus Query 83077 GGCGTTGTCAATACGCGAGAAGTTGCAAGTGCCGGTTGGCTGGTGCTCCTCTGGCTGCAG 83136 ||||||||| || || ||||||||||| || |||| |||||||||||||| |||| || Sbjct 17237 GGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGCTCCTCGGGCTTGAG 17296 Query 83137 GGCGAAGGAGTACACGTACACGCC----GACGTAGGGGGTGCCGGTGTGGTACAGGAATG 83192 ||||||||||||||| | ||| ||| | |||| || |||||||| | || | | Sbjct 17297 TCCGAAGGAGTACACGTTGATGCCCTTGGACCT-GGGGATGTTGGTGTGGTGCTGGTAGG 17355 Query 83193 GCTGGTACTGGTTGAAGTACTTGCCCAGCTGCTCCTTGAAGCGATCCTGACCGTTGAGCA 83252 |||| | ||||||||||| |||||| |||| | ||| | || || ||||||||| Sbjct 17356 GCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAACCTGTCGTGGCCGTTGAGCT 17415 Query 83253 CCAGCTTG 83260 ||||||| Sbjct 17416 GCAGCTTG 17423 Score = 104 bits (114), Expect = 3e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 83582 TCACCGCCGGTGTGCTGCACCTGCTCGATCAGGTACTCGTGGCCCTTCTGGGCGAAGCGG 83641 || ||||||||| ||||| |||||||||||||||||||||| ||||||||| | | Sbjct 17586 TCGCCGCCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCTGGGCGAACCTG 17645 Query 83642 CGGCGCTCCTCAGTGTCCAGGTACACGTAGTTGGCCCACA 83681 |||||||| || ||||||||||| ||||||| |||||| Sbjct 17646 CGGCGCTCGTCGGTGTCCAGGTAGACGTAGTCCACCCACA 17685 >seq98 Length=1748987 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 158961 CGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACAT 159020 |||||||||||| | || |||||||| || || | ||| || |||||||||||||| Sbjct 1547502 CGTCTCTCCAGTGCCGATGACAAAGTCGTCGGGCTCCTCCTGCTGCAGCATGAGCCACAT 1547443 Query 159021 GGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCC 159074 | | || || ||| | || || |||||||||||||| || |||| |||||| Sbjct 1547442 GCAGTACACATAGTCCCGGGCATGCCCCCAGTCGCGCTTCGCGTCCAGGTTCCC 1547389 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 124511 CGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATCGACTGCTGCAACATAAGCCACAT 124570 |||||| || ||||| || || || || ||||| | |||||||| ||| |||||||| Sbjct 1547502 CGTCTCTCCAGTGCCGATGACAAAGTCGTCGGGCTCCTCCTGCTGCAGCATGAGCCACAT 1547443 Query 124571 GGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCGCTTGGCATCCAGGTTTCC 124624 | | || |||||| || ||||||||||||||||| || |||||||| || Sbjct 1547442 GCAGTACACATAGTCCCGGGCATGCCCCCAGTCGCGCTTCGCGTCCAGGTTCCC 1547389 >seq57 Length=1368 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611 || ||||| || ||| ||||| |||||| ||||||| |||||||| ||| | | || Sbjct 1344 GGCAAGCGAAATGGGAGCTTCGCAATCTACATCGAGCCATGGCACGCAGACGTCTTCGAC 1285 Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TAC 53670 || || || || |||||| |||||||| |||| ||| || || || || ||| Sbjct 1284 TTCCTGGACCTCAAGAAGAATCACGGTGACGAGGAGAGGCGGGCGCGCGATCTCTTCTAC 1225 Query 53671 AGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG--AAGGACGAGGAGTGGTAC 53728 || ||||| | ||||||||||||||| | ||| || | |||| | ||| | Sbjct 1224 -GCCATGTGGGTACCGGACCTCTTCATGGAGCGCGTGCAGTCAGGGAC--TCAATGGAGC 1168 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCC 53759 |||||| ||| | || ||| ||||| |||| Sbjct 1167 CTGATGGACCCCAGCGCGTGTCCCGGGCTCC 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215274938800