Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq106 156 5e-33 seq100 154 2e-32 seq87 136 5e-27 seq99 123 3e-23 >seq106 Length=3132237 Score = 156 bits (172), Expect = 5e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| || || |||||||| || || |||||||| ||||| ||| | ||| | |||| Sbjct 2289124 AGACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATG 2289065 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||| | || || |||||||||||||| ||||| |||||||||||||| || || || | Sbjct 2289064 TCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCG 2289005 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || ||||| || ||||||| || ||||| || ||||| || |||| ||||| || | Sbjct 2289004 CCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTA 2288945 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || |||| || || ||||| Sbjct 2288944 CCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288914 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || || |||||||| || || || ||||| ||||| ||| | ||| | || Sbjct 2288274 CAGGACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAA 2288215 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 ||||| | || || |||||||||||||| || || || ||||||||||| || || || Sbjct 2288214 CGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTT 2288155 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| || ||||| || ||||||| || ||||| |||||||| || |||| ||||| || Sbjct 2288154 TGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTC 2288095 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || |||| || || ||||| Sbjct 2288094 CACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288062 Score = 145 bits (160), Expect = 9e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || || |||||||| || || || ||||| ||||| ||| | ||| | || Sbjct 2288727 CAGGACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAA 2288668 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 ||||| | || || |||||||||||||| || || || ||||||||||| || || || Sbjct 2288667 CGTGAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTT 2288608 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| || ||||| || ||||||| || ||||| || ||||| || |||| ||||| || Sbjct 2288607 TGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTC 2288548 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || |||| || || ||||| Sbjct 2288547 CACCCTCCACCTGGTGCTGCGCCTGCGTGGTGG 2288515 >seq100 Length=2336451 Score = 154 bits (170), Expect = 2e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || || |||||||| || || || ||||| ||||| ||| | ||| | || Sbjct 981415 CAGGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAA 981474 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 | ||||| || || ||||||||||||||||| ||||| ||||||||||| || || || Sbjct 981475 TGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTT 981534 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| || ||||| || ||||||| || || || || ||||| || |||| ||||| || Sbjct 981535 TGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTC 981594 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || ||||||| || ||||| Sbjct 981595 CACCCTCCACCTGGTGCTGCGTCTGCGTGGTGG 981627 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||| || ||| || || |||||||| || || || ||||| ||||| | Sbjct 980994 ATGCATTTTTTTTGCAGGACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCT 981053 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||| || || |||||||||||||| |||||||| |||||| Sbjct 981054 GACACCATCGAGAACGTGAAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAG 981113 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || || || || ||||| || Sbjct 981114 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAAC 981173 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || ||||||| || ||||| Sbjct 981174 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGTCTGCGTGGTGG 981220 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || || |||||||| || || || ||||| ||||| ||| | ||| | || Sbjct 980606 CAGGACCCTGACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAA 980665 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 ||||| || || |||||||||||||| || ||||| |||||||||||||| || || Sbjct 980666 CGTGAAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTT 980725 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| || ||||| || ||||||| || || || || ||||| || |||| ||||| || Sbjct 980726 TGCCGGCAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTC 980785 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| || || || || |||| || || || || Sbjct 980786 CACCCTCCACCTGGTGCTGCGCCTGCGTGGAGG 980818 Score = 141 bits (156), Expect = 1e-28 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || || |||||||| || || || ||||| ||||| ||| | ||| | || Sbjct 981821 CAGGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAA 981880 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 ||||| || || ||||||||||||||||| || || ||||||||||| || || || Sbjct 981881 CGTGAAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTT 981940 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| || ||||| || ||||| | || || || || ||||| || |||| ||||| || Sbjct 981941 TGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTC 982000 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 ||| || || || || |||| || || |||||||| Sbjct 982001 CACCCTCCACCTGGTGCTGCGCCTGCGTGGTGGACA 982036 >seq87 Length=36794 Score = 136 bits (150), Expect = 5e-27 Identities = 143/186 (77%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 57319 CAAGCTGGTGCTCAACGGCCAGGACCGCTTCAAGGAGCAGCTGGGCAAGTACTTCAACCA 57378 ||||||| |||||||||||| ||| | ||| | |||| |||||| ||||||||||| Sbjct 17423 CAAGCTGCAGCTCAACGGCCACGACAGGTTCGACGAGCGTCTGGGCTCGTACTTCAACCT 17364 Query 57379 GTACCAGCCACTGGTGTACCACACCGGCACGCCCTAC-CCA--GGCATCTACGTGTACTC 57435 | ||||| | |||||||| || ||| ||| |||||| |||||||||| Sbjct 17363 GGTGCAGCCCTACCAGCACCACACCAACATCCCCAGGTCCAAGGGCATCAACGTGTACTC 17304 Query 57436 CTTCGCTCTGCAGCCCGAGGAGCACCAGCCAACTGGCACCTGCAACTTCTCTCGCATTGA 57495 ||||| || ||||||||||||||||||| | || |||||||||||||| ||||| || Sbjct 17303 CTTCGGACTCAAGCCCGAGGAGCACCAGCCCTCCGGAACCTGCAACTTCTCCCGCATCGA 17244 Query 57496 CAACGC 57501 |||||| Sbjct 17243 CAACGC 17238 Score = 104 bits (114), Expect = 3e-17 Identities = 83/100 (83%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 56883 TGTGGGCCAACTACGTGTACCTGGACACTGAGGAGCGCCGCCGCTTCGCCCAGAAGGGCC 56942 |||||| ||||||| ||||||||||| || ||||||||| | ||||||||| || Sbjct 17685 TGTGGGTGGACTACGTCTACCTGGACACCGACGAGCGCCGCAGGTTCGCCCAGGTCTCCC 17626 Query 56943 ACGAGTACCTGATCGAGCAGGTGCAGCACACCGGCGGTGA 56982 |||||||||||||||||||| ||||| ||||||||| || Sbjct 17625 ACGAGTACCTGATCGAGCAGCTGCAGTTCACCGGCGGCGA 17586 >seq99 Length=2590953 Score = 123 bits (136), Expect = 3e-23 Identities = 156/213 (73%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 27420 CAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAA 27479 || ||| || ||||||||||| || || | ||||| |||||| ||| | ||| | || Sbjct 315375 CAGGACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCATCTGACACCATCGAGAA 315434 Query 27480 TTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTT 27539 | ||| | || | |||||||||||||| || || || |||||| |||| || || || Sbjct 315435 CGTCAAGTCCAAGGTCCAGGACAAGGAGGGCATCCCCCCGGACCAGTAGCGCCTGATCTT 315494 Query 27540 TGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATC 27599 ||| |||||||| || ||||| || |||| || |||||||| |||| || || || Sbjct 315495 TGCCGGTAAGCAGCTAGAGGACAGCCGCCCCCTGGCCGACTATAACATCCAGAA-GAGTC 315553 Query 27600 CACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || || |||| || |||||||| Sbjct 315554 CATCCTCCACCTGGTGCTGCGCCTGCGCGGTGG 315586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309644338720