Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq99 98.7 8e-16 seq92 84.2 2e-11 >seq99 Length=2590953 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 30067 AAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCA 30126 || ||| |||||| || || || || ||||||||| || | ||||||||| Sbjct 1045565 AACCTGGCACATGAGATGACAGGGTGGCAGAGCCATGTCTGGCAGCGCGGCGGGGTTCCA 1045506 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30186 ||||| || | | ||||| ||| | |||||| | ||||| | | | | | Sbjct 1045505 GGCGCTCAGCACCAGGCGCCGGTCGTTGGGGTTGCGCTTGATGGTGGCTATGAGCTGCGC 1045446 Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 |||||| || || ||| | || ||||||||| ||||||||||||||| || || || Sbjct 1045445 CAGCTGGTCAACGCCCTTGCCGCTGTAGTCTGCGTGCATGTCCGTGTACTCCGCCCCAAA 1045386 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30295 || | |||||| ||||||||||| || |||| ||| || | |||||| Sbjct 1045385 GTGGCGCCACTGAAACCCGTACACTGGCCCCAAGTCACCAACCTCCCTG 1045337 >seq92 Length=1443051 Score = 84.2 bits (92), Expect = 2e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 52796 GCAAAAGGG-GACGTGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGACAAGGACG 52854 ||| ||||| | ||| || ||| | || | |||||||||||||||||| | || || Sbjct 835756 GCAGAAGGGCGTGGTG-GGCGCCATAGTGGCGCAGGAGGACATGCCCTTCAGCGAGCGCG 835814 Query 52855 GGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||||||||| ||||| |||| ||| |||||| | |||||||| Sbjct 835815 GGGTCTGCCCCGACCTCATCATGAACCCGCACGGCTTCCCCTCCCGCATGACCGT 835869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309875097752