Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq100 89.7 3e-13 seq106 86.0 4e-12 >seq100 Length=2336451 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||||| ||| |||||| || ||||| || || | ||||| || Sbjct 980809 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGG 980750 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | |||||| |||||||| || | |||||| Sbjct 980749 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCC 980690 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 980689 TTGTCCTGGATCTT 980676 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| ||| |||||| || ||||| || || | || || || Sbjct 981618 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 981559 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| |||||||| || | ||||||| Sbjct 981558 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCC 981499 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 981498 TTGTCCTGGATCTT 981485 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 || |||| ||||| ||||| ||| |||||| || ||||| || || | || || || Sbjct 982024 AGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 981965 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || |||||||| || | ||||| |||||||| || | ||||||| Sbjct 981964 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCC 981905 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 981904 TTGTCCTGGATCTT 981891 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||||| ||| |||||| || ||||| || || | || || || Sbjct 981211 AGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGG 981152 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| |||||||| || | |||||| Sbjct 981151 CCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCC 981092 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 981091 TTGTCCTGGATCTT 981078 >seq106 Length=3132237 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 34476 GTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC 34535 || ||| || | || |||| ||||| ||||| ||| |||||| || ||||| || || Sbjct 2288058 GTTGCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 2288117 Query 34536 TGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGG 34595 || || || || | || || || || || |||||||| || | ||||| |||||||| Sbjct 2288118 TGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGG 2288177 Query 34596 CGGCACTCCCTCCTTGTCTGTGATCTT 34622 || | ||||||||||| |||||| Sbjct 2288178 GGGGATGCCCTCCTTGTCCTGGATCTT 2288204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729193408698