Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq18 792 0.0 >seq18 Length=145863 Score = 792 bits (878), Expect = 0.0 Identities = 757/961 (79%), Gaps = 6/961 (1%) Strand=Plus/Minus Query 176147 TTTACGTTGGTTGGTTTGGTGTGCTCATGATTCCATGTCTGCTCACTGCTGCAGCATGTT 176206 ||||| |||||||||||||||| || ||||| || ||| | ||||| | | ||| Sbjct 120597 TTTACATTGGTTGGTTTGGTGTTCTAATGATCCCTACTCTTTTAACTGCAACTTC-TGTG 120539 Query 176207 TT-ATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 || || | |||||| |||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 120538 TTCATTATCGCATTTGTTGCTGCACCTCCTGTAGACATCGATGGTATCCGTGAGCCTGTA 120479 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 |||| |||||||| || || ||||||||||| || || || || || || | |||||| Sbjct 120478 TCAGGTTCTCTACTTTACGGTAACAACATCATTTCTGGTGCTGTTGTTCCTACATCAAAC 120419 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 ||||| || || |||||||||||||| |||||||| || || ||||||||||||| ||| Sbjct 120418 GCAATTGGTCTGCACTTCTACCCAATTTGGGAAGCTGCTTCACTTGACGAATGGCTTTAC 120359 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCT-CAGCTTACAT 176444 || || || || |||||||| | |||| |||||| | | || || | | ||| |||| Sbjct 120358 AACGGTGGTCCTTACCAACTAATCGTATGTCACTTCTTCCTAGGCATTTGCTGCT-ACAT 120300 Query 176445 GGGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATA 176504 ||| || | ||||||||| || | | |||| |||||||| |||||| ||| || || Sbjct 120299 GGGTCGTGAGTGGGAACTTTCTTTCCGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTA 120240 Query 176505 CTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATC 176564 |||||||||||| | || || | || || ||| || |||| || |||||||||| || Sbjct 120239 CTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCTATCGGTCAAGGTTC 120180 Query 176565 TTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCA 176624 ||||| |||||||||||| | || |||||||| || |||||||| ||| |||| ||||| Sbjct 120179 ATTCTCAGATGGTATGCCTTTGGGTATTTCAGGAACTTTCAACTTCATGATTGTTTTCCA 120120 Query 176625 AGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGG 176684 ||| ||||||||||| || |||||||||||||| |||||||| || || |||||||| || Sbjct 120119 AGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGG 120060 Query 176685 TGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTCTTCACTTGTTAGAGAGAC 176744 ||| || ||||||||||| |||||||| ||| || |||||||||||| | | || || Sbjct 120059 TGGTTCACTTTTCTCAGCTATGCACGGTTCTCTAGTAACTTCTTCACTTATCCGTGAAAC 120000 Query 176745 AACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACAAGAAGAAGAGACATACAA 176804 || || ||||||||| |||| |||||||||||||| ||||||||||| || ||||| Sbjct 119999 TACTGAGAACGAATCAGCAAACGCTGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAA 119940 Query 176805 CATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAATAA 176864 |||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| || Sbjct 119939 CATTGTTGCTGCACACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCATTCAACAA 119880 Query 176865 CTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGTTTGCATCTGGTTTACTGC 176924 ||| | ||||||||||||||||| || | || || ||| | |||||||||||||| Sbjct 119879 CTCTCGTTCACTTCACTTCTTCCTTGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGC 119820 Query 176925 AATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCTT 176984 | ||| | | || |||||||||||||||||||| ||||||||||||||||| || | Sbjct 119819 TCTTGGTATCTCTACTATGGCATTCAACCTTAACGGATTCAACTTCAACCAGTCAGTTGT 119760 Query 176985 AGACAACTC-TGGTAAAGTGATTCCTACATGGGGAGATATCCTTAACCGTGCAAACCTTG 177043 |||| ||| ||| || || || ||||| || ||| | |||||||| ||||||| Sbjct 119759 AGAC-TCTCAAGGTCGCGTTATCAACACTTGGGGTGACATCATCAACCGTGCCAACCTTG 119701 Query 177044 GTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCAG 177103 |||||||||| |||||||| | || || |||||||||||||| ||||||||| | | || Sbjct 119700 GTATGGAAGTAATGCACGAAAGAAACGCACACAACTTCCCACTAGACCTTGCTTCAGTAG 119641 Query 177104 A 177104 | Sbjct 119640 A 119640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603493600369920