Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq100 181 2e-40 seq106 176 1e-38 seq99 123 6e-23 >seq100 Length=2336451 Score = 181 bits (200), Expect = 2e-40 Identities = 157/195 (81%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || || || | ||||| Sbjct 981205 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 981146 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| ||||||| || ||||||||| Sbjct 981145 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 981086 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||||||| || ||||| || ||||| ||| Sbjct 981085 TGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTC 981026 Query 211083 TTTCCCGTGAGAGTC 211097 || || ||||||||| Sbjct 981025 TTGCCAGTGAGAGTC 981011 Score = 172 bits (190), Expect = 1e-37 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || || || | ||||| Sbjct 981612 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 981553 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| ||||| | ||| ||||||||| Sbjct 981552 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCC 981493 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || ||||||||||||||| || ||||| || ||||| ||| Sbjct 981492 TGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTC 981433 Query 211083 TTTCCCGTGAGAGTC 211097 || || ||||| ||| Sbjct 981432 TTGCCAGTGAGGGTC 981418 Score = 167 bits (184), Expect = 5e-36 Identities = 154/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || || || | || || Sbjct 982018 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCC 981959 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | ||| ||||||||| Sbjct 981958 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC 981899 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||||||| || ||||| || ||||| ||| Sbjct 981898 TGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTC 981839 Query 211083 TTTCCCGTGAGAGTC 211097 || || ||||| ||| Sbjct 981838 TTGCCAGTGAGGGTC 981824 Score = 163 bits (180), Expect = 7e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| || |||||||| || |||||||| || || || || Sbjct 980816 TCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAG 980757 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | ||||| |||||||||||||| || ||||| || || || ||||| ||||| | Sbjct 980756 TGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGAT 980697 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||||||||| |||||||| ||||||||||||||| || ||||| Sbjct 980696 GCCCTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTC 980637 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || ||||| ||||| || || || ||| Sbjct 980636 CAGTGTGATGGTCTTGCCAGTCAGGGTC 980609 >seq106 Length=3132237 Score = 176 bits (194), Expect = 1e-38 Identities = 156/195 (80%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 2288530 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 2288589 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 2288590 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 2288649 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||||||| || ||||| || ||||| ||| Sbjct 2288650 TGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTC 2288709 Query 211083 TTTCCCGTGAGAGTC 211097 || || ||||||||| Sbjct 2288710 TTGCCAGTGAGAGTC 2288724 Score = 172 bits (190), Expect = 1e-37 Identities = 155/195 (79%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || || ||||| | ||||| Sbjct 2288077 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCC 2288136 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 2288137 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 2288196 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| ||||||||||||||| || ||||| || ||||| ||| Sbjct 2288197 TGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTC 2288256 Query 211083 TTTCCCGTGAGAGTC 211097 || || || |||||| Sbjct 2288257 TTGCCAGTCAGAGTC 2288271 Score = 168 bits (186), Expect = 2e-36 Identities = 155/196 (79%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 2288929 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 2288988 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| ||||| || ||||| || |||| || ||||||||| Sbjct 2288989 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 2289048 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||||||||||||||| || ||||| || ||||| ||| Sbjct 2289049 TGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTC 2289108 Query 211083 TTTCCCGTGAGAGTCT 211098 || || || ||||||| Sbjct 2289109 TTGCCAGTCAGAGTCT 2289124 >seq99 Length=2590953 Score = 123 bits (136), Expect = 6e-23 Identities = 145/195 (74%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || ||||||||| | |||||||||| || || |||| | | || Sbjct 315571 AGCACCAGGTGGAGGATGGACTCTTCT-GGATGTTATAGTCGGCCAGGGGGCGGCTGTCC 315513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| ||||| | ||||| || || | || ||||||||| Sbjct 315512 TCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGGATGCCCTCCTTGTCC 315453 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||| ||| || ||||| |||||||||||||| || ||||| | ||||| ||| Sbjct 315452 TGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCACCTCCAAGGTGATGGTC 315393 Query 211083 TTTCCCGTGAGAGTC 211097 || || ||||| ||| Sbjct 315392 TTGCCGGTGAGGGTC 315378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150425726690