Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq106 152 1e-31 seq100 147 5e-30 seq15 125 2e-23 seq99 104 6e-17 seq18 100 7e-16 >seq106 Length=3132237 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| || || || || |||| ||||| ||||||| || Sbjct 2288919 ACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGT 2288978 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || |||||||| || || || ||||| || ||||| || Sbjct 2288979 GCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCC 2289038 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| |||||||||||| || | ||||| || | Sbjct 2289039 CTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAG 2289098 Query 225672 CGTGATCGTCTTGCCCGTCAAAGT 225695 ||||| |||||||| |||| ||| Sbjct 2289099 GGTGATGGTCTTGCCAGTCAGAGT 2289122 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| || |||| || Sbjct 2288067 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGT 2288126 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 2288127 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 2288186 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| |||| ||||| || | Sbjct 2288187 CTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAG 2288246 Query 225672 CGTGATCGTCTTGCCCGTCAAAGT 225695 |||||| |||||||| |||| ||| Sbjct 2288247 CGTGATGGTCTTGCCAGTCAGAGT 2288270 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 2288520 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGT 2288579 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 2288580 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCC 2288639 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| |||| ||||| || | Sbjct 2288640 CTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAG 2288699 Query 225672 CGTGATCGTCTTGCCCGTCAAAGT 225695 |||||| |||||||| || | ||| Sbjct 2288700 CGTGATGGTCTTGCCAGTGAGAGT 2288723 >seq100 Length=2336451 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 981215 ACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 981156 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || ||||| || Sbjct 981155 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCC 981096 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| |||| ||||| || | Sbjct 981095 CTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAG 981036 Query 225672 CGTGATCGTCTTGCCCGTCAAAGT 225695 ||||| |||||||| || | ||| Sbjct 981035 TGTGATGGTCTTGCCAGTGAGAGT 981012 Score = 145 bits (160), Expect = 2e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 980813 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGT 980754 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 980753 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCC 980694 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| |||| ||||| || | Sbjct 980693 CTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAG 980634 Query 225672 CGTGATCGTCTTGCCCGTCA 225691 ||||| |||||||| |||| Sbjct 980633 TGTGATGGTCTTGCCAGTCA 980614 Score = 145 bits (160), Expect = 2e-29 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 981622 ACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 981563 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||||| || || ||||| || || || ||||| || || || || Sbjct 981562 GCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCC 981503 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| |||| ||||| || | Sbjct 981502 CTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAG 981443 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 981442 GGTGATGGTCTTGCCAGT 981425 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || |||||||| ||||| || || |||| ||||| ||||||| || Sbjct 982028 ACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGT 981969 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| || || || ||||| || || || || Sbjct 981968 GCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCC 981909 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| |||||| ||||||||||| |||| ||||| || | Sbjct 981908 CTCCTTGTCCTGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAG 981849 Query 225672 CGTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 981848 GGTGATGGTCTTGCCAGT 981831 >seq15 Length=69663 Score = 125 bits (138), Expect = 2e-23 Identities = 198/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 ||| | || ||||| | || ||||| ||| | || || || ||| |||||||| Sbjct 31422 TATCTTATGTTTGGGGCATTCTCTGGAATTTTGGGAACCTGCTTCTCTGCTCTTATAAGG 31481 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 || ||| | | ||||| ||| ||| | | || || ||| || |||||||| Sbjct 31482 TTGGAACTTTCACAGCCGGGAGATCAGATACTAGGGGGAAACTACCAGCTCTACAACGTA 31541 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 || || || |||||||||||| ||||||| ||||| | |||||||| | ||||| || Sbjct 31542 ATAATAACAGCGCATGCCTTTCTTATGATATTCTTCATGGTTATGCCTGCAATGATTGGA 31601 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || || || || || ||||| | | || || |||||||| ||||| || || | Sbjct 31602 GGGTTTGGTAACTGGTTTGTTCCAATTCTTATCGGCGCTCCTGACATGGCATTCCCGCGT 31661 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||||| || |||||||| | || ||||| || | ||||| Sbjct 31662 CTAAACAACATCAGTTTTTGGCTGCTGCCGCCCTCACTCTTTCT 31705 Score = 125 bits (138), Expect = 2e-23 Identities = 198/284 (70%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 ||| | || ||||| | || ||||| ||| | || || || ||| |||||||| Sbjct 33056 TATCTTATGTTTGGGGCATTCTCTGGAATTTTGGGAACCTGCTTCTCTGCTCTTATAAGG 33115 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTT 7566 || ||| | | ||||| ||| ||| | | || || ||| || |||||||| Sbjct 33116 TTGGAACTTTCACAGCCGGGAGATCAGATACTAGGGGGAAACTACCAGCTCTACAACGTA 33175 Query 7567 ATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGC 7626 || || || |||||||||||| ||||||| ||||| | |||||||| | ||||| || Sbjct 33176 ATAATAACAGCGCATGCCTTTCTTATGATATTCTTCATGGTTATGCCTGCAATGATTGGA 33235 Query 7627 GGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGG 7686 || || || || || || ||||| | | || || |||||||| ||||| || || | Sbjct 33236 GGGTTTGGTAACTGGTTTGTTCCAATTCTTATCGGCGCTCCTGACATGGCATTCCCGCGT 33295 Query 7687 CTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || ||||| || |||||||| | || ||||| || | ||||| Sbjct 33296 CTAAACAACATCAGTTTTTGGCTGCTGCCGCCCTCACTCTTTCT 33339 Score = 98.7 bits (108), Expect = 2e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 ||||| ||||||||| |||| ||||||||||| |||||||||||||||| || |||| | Sbjct 45389 GGTGTCACAGAATAGGGGGTGGCGACTGTTTAATAAAAACACAGGACTCAGCAAAGTGGC 45448 Query 372684 AAAACGATGTATAGGGTCTGAC 372705 || |||| |||| ||||||||| Sbjct 45449 AACACGACGTATTGGGTCTGAC 45470 Score = 96.9 bits (106), Expect = 8e-15 Identities = 105/138 (76%), Gaps = 1/138 (1%) Strand=Plus/Minus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || |||| ||||||| || | ||||| | || ||||||||||||| |||||| || Sbjct 50192 ATGTCAAGGGCTGGTAAGGTTTTGCGCGTTGTTTCGAATTAAACCACATGTTCCACCACT 50133 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | || | ||||| || ||||||||| || |||||||| |||| | |||||| ||| Sbjct 50132 TGTATGGGCCCCCGTCTATTCCTTTGAGTTCTAGCCTTGCGGCCGTACTCCTCAGGCGGA 50073 Query 7845 ATATTT-ACGCGTTAGCT 7861 ||| ||||||||||| Sbjct 50072 GGGTTTAACGCGTTAGCT 50055 >seq99 Length=2590953 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | ||| || |||||||| |||| |||| | ||| || || ||||||| | Sbjct 315580 CGCAGGCGCAGCACCAGGTGGAGGATGGACTCTTCT-GGATGTTATAGTCGGCCAGGGGG 315522 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | | || ||||||||||| || || ||||| || || | ||||| || || || || Sbjct 315521 CGGCTGTCCTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGGATGCCC 315462 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||| ||| ||| || ||||||||||| || | ||||| || || Sbjct 315461 TCCTTGTCCTGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCACCTCCAAG 315402 Query 225673 GTGATCGTCTTGCCCGT 225689 ||||| |||||||| || Sbjct 315401 GTGATGGTCTTGCCGGT 315385 >seq18 Length=145863 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 27601 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 27660 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | ||||||| | || | | |||| || | | || |||| Sbjct 27661 CCGTCAATTCCTTTGAGTTTCACCCTTGCGAGCATACTCCCCAGGCGGGACACTTAACGC 27720 Query 7855 GTTAGCT 7861 ||||||| Sbjct 27721 GTTAGCT 27727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529580393564