Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq99 87.8 1e-12 seq92 82.4 6e-11 >seq99 Length=2590953 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 27384 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 27443 |||||||||||||| || | | ||||| ||| | |||||| | ||||| | | | Sbjct 1045514 GGGGTTCCAGGCGCTCAGCACCAGGCGCCGGTCGTTGGGGTTGCGCTTGATGGTGGCTAT 1045455 Query 27444 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTC 27503 | | |||||| || || ||| | || ||||||| | ||||||||||||||| Sbjct 1045454 GAGCTGCGCCAGCTGGTCAACGCCCTTGCCGCTGTAGTCTGCGTGCATGTCCGTGTACTC 1045395 Query 27504 TGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 27561 || || || || | ||| || ||||||||||| || |||| ||| || | |||||| Sbjct 1045394 CGCCCCAAAGTGGCGCCACTGAAACCCGTACACTGGCCCCAAGTCACCAACCTCCCTG 1045337 >seq92 Length=1443051 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 48607 CAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCAC 48666 |||||||||||||||||| | || |||||| |||||||||||||| ||||| ||| Sbjct 835787 CAGGAGGACATGCCCTTCAGCGAGCGCGGGGTCTGCCCCGACCTCATCATGAACCCGCAC 835846 Query 48667 GCCTTTCCCTCCAGGATGACCGT 48689 | ||| |||||| | |||||||| Sbjct 835847 GGCTTCCCCTCCCGCATGACCGT 835869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369506722642886