Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq18 843 0.0 seq17 518 4e-142 >seq18 Length=145863 Score = 843 bits (934), Expect = 0.0 Identities = 780/986 (79%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 |||||| |||||| |||| |||||| | |||||||| || | ||||||||||| || Sbjct 120632 CTTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCT 120573 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 ||||| || ||||| || | ||||| |||| ||||| | || || || ||||| | Sbjct 120572 AATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 ||||||| |||||||| || ||||| || || || | || || || | || || |||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 ||||||| |||||||| ||||||||| | || ||||||||||| || |||||||| || | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| || ||||| || || ||||| || |||||||||||||||||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| || | ||| | | ||||||||||||||||||||||||| | |||| || Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 || | || |||||||| |||||| ||| ||||| ||||| ||||| ||||| || | Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 183614 CTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTA 183673 |||| ||| | |||| ||| ||||||||||||| || ||||||||||| |||||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 183674 TCAGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 183733 | || || || |||| ||| |||| |||||||| |||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 183734 CCTTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACG 183793 | ||||||||||| ||||| |||||||| ||||||||||| || ||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 183794 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATG 183853 ||||||| || ||||| || || | |||||||| |||||| || ||| ||| || Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTG 119974 Query 183854 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTG 183913 ||||||| ||||||||||||||||| || ||||||||||| ||||| || || ||||||| Sbjct 119973 GTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTG 119914 Query 183914 GTCGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTG 183973 ||||||| |||||||| || ||||| || ||||| |||||||| |||||||||||||||| Sbjct 119913 GTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTG 119854 Query 183974 CTGCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTA 184033 |||||||||| || || || ||||||||||||||||||||| | ||||||||||| | Sbjct 119853 CTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCA 119794 Query 184034 ACCTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACA 184093 |||| || || || |||||||||||||| | | || ||||||||| || | |||| Sbjct 119793 ACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACA 119734 Query 184094 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATG 184153 | |||| ||| | |||||||||| ||||| |||||||| |||||||| | || | Sbjct 119733 CTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACG 119674 Query 184154 CTCACAACTTCCCTCTCGACCTTGCT 184179 | ||||||||||| || ||||||||| Sbjct 119673 CACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 518 bits (574), Expect = 4e-142 Identities = 733/1023 (72%), Gaps = 14/1023 (1%) Strand=Plus/Minus Query 185958 TGGTTCGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCT 186017 ||||| |||| | ||||||||| | || || || ||||| || || ||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 186018 GGATTACTTCTTTTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACG 186077 || | | || || || || ||||| | ||| | ||||||||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 186078 TTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTTCTTACCTTGAGGG-TGCTAATTT 186136 || ||||| ||||| || || || | || ||||||| | || || ||| | || Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 186137 TCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTC--TCTTCTTCTACTT 186194 | | || ||||| || |||||||| || || |||||||| || | || ||| || Sbjct 87450 T-TAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTA 87394 Query 186195 TGGGGTCCTGAGTCTCAAGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAAT 186254 ||||| |||||| | ||||| || | | ||||||| || | || || || ||| | Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 186255 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATC 186314 || || || | || || |||||||| || || || || ||||| |||||||||||| | Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 186315 ---AG-TCGTCTCGTAGGTATCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGC 186370 || ||| ||| | ||||| ||||| || ||||| || || | ||||| || Sbjct 87273 GCAAGATCG----GTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGC 87218 Query 186371 TGTCTTTGTTAGTGTATTCCTCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCC 186430 |||||| || || ||||| ||||| ||| | ||||| || |||||||| || || Sbjct 87217 TGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCC 87158 Query 186431 CTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTG 186490 |||||| || || |||||||| |||| | | ||| ||||||| ||||||||||| Sbjct 87157 TAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTG 87098 Query 186491 GACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTC 186550 |||| | || || ||||||||||||||||| |||||| | || |||| ||| || || | Sbjct 87097 GACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATG 87038 Query 186551 AGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACAC 186610 ||||| || || | || ||||| || ||||||| ||||||||| || || ||||| Sbjct 87037 TGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACAC 86978 Query 186611 ATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAG 186670 ||| |||||| | | ||||||| ||||| || || || ||||| || || ||| | Sbjct 86977 TTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCG 86918 Query 186671 ATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCAT 186730 || |||||||| ||||| || | || || || || ||||||||||||||||| || Sbjct 86917 TTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTAT 86858 Query 186731 GCTCTTTGTTCCTGTTATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCT 186790 ||| ||||| ||||| | |||||||||| | | ||||| |||| || |||||||| Sbjct 86857 GCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCT 86798 Query 186791 TAACCTTCGTGCTTATGACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTT 186850 |||| | || || ||||||||||| || ||| | | ||||| ||||| ||||| || Sbjct 86797 TAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATT 86738 Query 186851 CGAGACGTTCTATACCAAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACC 186910 |||||| ||||| || || || || || | || |||||| | | || |||||||| | Sbjct 86737 CGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGC 86678 Query 186911 AGTGGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGC 186970 ||| || ||||||||||| ||||||| || || || || || ||| | || ||||| Sbjct 86677 TCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 86618 Query 186971 TCT 186973 ||| Sbjct 86617 TCT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622069575756720