Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq18 785 0.0 seq17 607 9e-169 >seq18 Length=145863 Score = 785 bits (870), Expect = 0.0 Identities = 771/987 (78%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||| | ||||| ||| || || || || | || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 163988 ATGATTCCCTGC-CTGCTGGCAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| | || | | || ||| | ||| ||||| ||||| || | | ||| | Sbjct 120571 ATGAT-CCCTACTCTTTTAACTGCAACTTC-TGTGTTCATTATCGCATTTGTTGCTGCAC 120514 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 ||||||| ||||||||||| ||||| || || || | ||||| || | || || |||| Sbjct 120513 CTCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACA 120454 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 ||||||| |||||||||||| | ||| | || ||||| || ||||||||||||||||| | Sbjct 120453 ACATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAA 120394 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| || || ||||||||||| |||||||||||||||| |||||| | | Sbjct 120393 TTTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCG 120334 Query 164226 TGTTCCACTTCCTGATTGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 164284 | | |||||| | | ||||| | |||| ||||||||||||||||||||||||||| | Sbjct 120333 TATGTCACTTCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTC 120275 Query 164285 CGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 164344 ||| | || |||||||| ||||| ||||| |||||||| || || || || || | | Sbjct 120274 CGTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACT 120215 Query 164345 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 164404 || || ||| | |||| ||| ||||||||||||| ||||| |||| |||||| |||| Sbjct 120214 GCTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGT 120155 Query 164405 ATCTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCAC 164464 || || ||||| ||||||| |||| | || ||||| ||||||||||||||||| |||||| Sbjct 120154 ATTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCAC 120095 Query 164465 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 164524 || ||||| ||||| || || || |||||||| || ||||| || ||| || |||||| Sbjct 120094 CCATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCAC 120035 Query 164525 GGTTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTAT 164584 ||||| || || |||||||| || | ||||| || || || || || || ||| | Sbjct 120034 GGTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCT 119975 Query 164585 GGTTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTT 164644 |||||||| || ||||| ||||||||||| |||||||| ||||| || |||||||||||| Sbjct 119974 GGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTT 119915 Query 164645 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 164704 |||||||| || |||||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 119914 GGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTT 119855 Query 164705 GCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTC 164764 || || |||||||| || |||||||||||||||||||| || | || ||||||||| Sbjct 119854 GCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTC 119795 Query 164765 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAAC 164824 ||||| ||||| ||||||||||||||||| | | || ||| ||||| || ||||| Sbjct 119794 AACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAAC 119735 Query 164825 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAAT 164884 || |||| ||| | |||||||||| || || |||||||| |||||||| | || Sbjct 119734 ACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAAC 119675 Query 164885 GCTCACAACTTCCCTCTCGACCTTGCT 164911 || ||||||||||| || ||||||||| Sbjct 119674 GCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 607 bits (672), Expect = 9e-169 Identities = 752/1026 (73%), Gaps = 10/1026 (1%) Strand=Plus/Minus Query 165149 TTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTC 165208 |||||| |||| | || |||||| | | || || || || || ||||||||||| Sbjct 87631 TTGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTC 87572 Query 165209 TGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTAC 165268 ||| || | || || || || ||||| ||||| | || || ||| | || || || || Sbjct 87571 TGGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCAC 87512 Query 165269 TTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGG-TGCAAACT 165327 ||||| || |||||| || || |||||||| ||||| || | || || ||||| || Sbjct 87511 ATTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAA-CT 87453 Query 165328 TTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTAT 165387 | | || || || ||||| ||||||||| || |||||||| || | || | |||| Sbjct 87452 TCTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTAT 87393 Query 165388 GGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTT 165447 |||| |||||| | ||||| ||||| | |||||||| || | || || || ||| ||| Sbjct 87392 GGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTT 87333 Query 165448 TTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGG 165507 | || || | || || |||||||| ||||| || || ||||| || ||||||||||| | Sbjct 87332 TCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTG 87273 Query 165508 CACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCT 165563 || || |||||| ||||||||||||| |||||||| ||||| | ||||||||| Sbjct 87272 CAAGA----TCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCT 87217 Query 165564 GTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACCG 165623 || ||||| || || ||||| |||||| |||||||||| ||||||||| || || Sbjct 87216 GTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCT 87157 Query 165624 TCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGG 165683 || || || || |||||||||||||| | || ||| ||||||| ||||| |||||| Sbjct 87156 AGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGG 87097 Query 165684 ACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTTTCT 165743 ||||| || || || ||||||||||| || |||||| | |||| | ||| | || | | Sbjct 87096 ACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGT 87037 Query 165744 GCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACT 165803 || ||||| || | ||||||||||| ||| | | |||||||||||| || |||||| Sbjct 87036 GCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACT 86977 Query 165804 TTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGT 165863 ||| ||||| | || || | || || || || || ||||| || ||||||||| Sbjct 86976 TTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGT 86917 Query 165864 TTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATG 165923 || ||||| || || |||||| | |||||| || || ||||||||||| ||||||||| Sbjct 86916 TTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATG 86857 Query 165924 CTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTC 165983 || ||||| ||||| | || ||||||| ||| | |||||| | || || || || || Sbjct 86856 CTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTT 86797 Query 165984 AATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTT 166043 || | || || ||||| ||||| || || ||||| | || |||||||| || || || Sbjct 86796 AACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTC 86737 Query 166044 GAAACGTTCTATACGAAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCT 166103 || || ||||| || |||||||| || || || ||||| | | || ||| |||| || Sbjct 86736 GAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCT 86677 Query 166104 GTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCA 166163 ||||| || ||||| || |||| ||||| || || || || ||| | || ||||| Sbjct 86676 CAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCT 86617 Query 166164 CTTTAA 166169 |||||| Sbjct 86616 CTTTAA 86611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557653661107920