Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq106 107 4e-18 seq100 100 7e-16 >seq106 Length=3132237 Score = 107 bits (118), Expect = 4e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || |||||||| || ||||||||||| ||||| | || | ||||| Sbjct 2288929 AGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 2288988 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| || | ||||||||| | | || || ||||| || Sbjct 2288989 TCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 2289048 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| | || | | |||| ||| ||| || ||||| || || || Sbjct 2289049 TGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTC 2289108 Query 152073 TTGCCCGTGAGAGTCTTCA 152091 ||||| || ||||||| || Sbjct 2289109 TTGCCAGTCAGAGTCTGCA 2289127 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 2288530 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCATCC 2288589 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | ||| || ||||| || Sbjct 2288590 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 2288649 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 2288650 TGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTC 2288709 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| ||||||||| Sbjct 2288710 TTGCCAGTGAGAGTC 2288724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || || | || | ||||| Sbjct 2288077 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCC 2288136 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | ||| || ||||| || Sbjct 2288137 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 2288196 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 2288197 TGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGCGTGATGGTC 2288256 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| || |||||| Sbjct 2288257 TTGCCAGTCAGAGTC 2288271 >seq100 Length=2336451 Score = 100 bits (110), Expect = 7e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 981612 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 981553 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | |||||| ||||| || Sbjct 981552 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGGATTCCCTCCTTGTCC 981493 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | |||| || ||| || || || || || || Sbjct 981492 TGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTC 981433 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| ||||| ||| Sbjct 981432 TTGCCAGTGAGGGTC 981418 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 981205 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCATCC 981146 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | || || ||||| || Sbjct 981145 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC 981086 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 981085 TGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTC 981026 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| ||||||||| Sbjct 981025 TTGCCAGTGAGAGTC 981011 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||||| | || | || || Sbjct 982018 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCC 981959 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | |||||| ||||| || Sbjct 981958 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCC 981899 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 981898 TGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTC 981839 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| ||||| ||| Sbjct 981838 TTGCCAGTGAGGGTC 981824 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| ||||| | || | ||||| Sbjct 980803 AGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGTGTGCGGCCATCC 980744 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||| ||||| || | ||||||||||| | ||| || ||||| || Sbjct 980743 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 980684 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 980683 TGGATCTTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCACCTCCAGTGTGATGGTC 980624 Query 152073 TTGCCCGTGAGAGTC 152087 ||||| || || ||| Sbjct 980623 TTGCCAGTCAGGGTC 980609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819232967126