Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq18 829 0.0 seq17 598 5e-166 >seq18 Length=145863 Score = 829 bits (918), Expect = 0.0 Identities = 781/988 (79%), Gaps = 8/988 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 |||||| | ||||| || ||| | || || || || | |||||||| ||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| || ||||| ||||| |||| || || ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 |||||| |||||||| || |||||||| || || | ||||| || | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 ||||||||||||||||||||||||| | || ||||| |||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 |||||||| ||||| || || || ||||| ||||| |||||||||| |||||| | | Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 177897 CTTCCACTTCCTGATCGGTATCTA-TGCATACATGGGTCGTGAGTGGGAACTTTCTTACC 177955 | |||||| | | || || | ||| |||||||||||||||||||||||||||| || Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGC-TACATGGGTCGTGAGTGGGAACTTTCTTTCC 120274 Query 177956 GCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTG 178015 | |||| |||||||| |||||| |||||| |||||||| ||||| || || || ||| Sbjct 120273 GTTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTG 120214 Query 178016 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTA 178075 |||||||| | | || ||| ||||||||||||| ||||| || | |||||| |||||| Sbjct 120213 CTGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTA 120154 Query 178076 TCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 178135 | || || ||||||| |||| |||| |||||||| |||||||||||||| ||||||| Sbjct 120153 TTTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACC 120094 Query 178136 CCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACG 178195 | ||||||||| | || || |||||||| || |||||||| || ||| || ||||||| Sbjct 120093 CATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACG 120034 Query 178196 GTTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTA 178253 ||||||| || ||||| || || | |||||||| || ||||||||| |||| ||| Sbjct 120033 GTTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAA--TCAGCAAACGC 119976 Query 178254 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTT 178313 ||||||||| ||||||||||||||||| || |||||||| |||||||| || |||||||| Sbjct 119975 TGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTT 119916 Query 178314 CGGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCT 178373 ||||| || |||||||||||||| || ||||||||||| ||||| || ||||||||||| Sbjct 119915 TGGTCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCT 119856 Query 178374 CGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATT 178433 || || |||||||| || ||||||||||| |||||||||||| | || |||||||| Sbjct 119855 TGCTGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATT 119796 Query 178434 CAACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAA 178493 |||||| ||||| ||||||||||||||||| | | || ||| || || | || Sbjct 119795 CAACCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAA 119736 Query 178494 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAA 178553 ||| |||| ||| | |||||||||| |||||||||||||| |||||||| | || Sbjct 119735 CACTTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAA 119676 Query 178554 TGCTCACAACTTCCCTCTTGACCTCGCT 178581 || ||||||||||| || ||||| ||| Sbjct 119675 CGCACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 598 bits (662), Expect = 5e-166 Identities = 745/1020 (73%), Gaps = 8/1020 (1%) Strand=Plus/Minus Query 178836 TGGTTTGATGTACTCGATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCA 178895 |||||||||| | | ||||||||| | ||||| || || || || ||||| ||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 178896 GGTCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACA 178955 ||||| | || |||||||| |||||| | ||| | || || ||| | || || || ||| Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 178956 TTCGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTC 179015 ||||| || || ||||| || || || |||| ||| || | || ||||| || ||| Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 179016 CTTACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGG 179075 | || || || || |||||||| || || | || || || | | | |||||| Sbjct 87450 TTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTCCTATGG 87391 Query 179076 GGTCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTT 179135 || || || || || || || || |||||| || | || || || ||| |||| Sbjct 87390 GGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTC 87331 Query 179136 GTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCA 179195 || || | || |||||||| || || || || || ||||| || ||||||||| | ||| Sbjct 87330 GTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCA 87271 Query 179196 CGTCTAGTCGGTA----TTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGT 179251 | |||||| ||||||||||||| || || || || || | || |||||||| Sbjct 87270 AGA----TCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGT 87215 Query 179252 CTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTC 179311 ||| || || || || || || |||||| | ||||| || |||||||||||||| Sbjct 87214 CTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAG 87155 Query 179312 GTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGAC 179371 ||||| || || || || ||||| || | || ||| | || || |||||||||||||| Sbjct 87154 CTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGAC 87095 Query 179372 GCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGC 179431 ||| ||||| ||||||||||||||||| |||||| | || || | ||| | || ||||| Sbjct 87094 GCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGC 87035 Query 179432 CATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATT 179491 ||||| || || |||||||||||||| || |||||||| ||||| | || || || Sbjct 87034 AATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTT 86975 Query 179492 CAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTT 179551 | |||||| | || || |||| || ||||| || || ||||| || || |||||||| Sbjct 86974 CCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTT 86915 Query 179552 CTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTT 179611 ||||| || ||||||||| | || ||| || || |||||||| |||||||||||| | Sbjct 86914 TTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCT 86855 Query 179612 GTTTGTTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAA 179671 ||||| ||||| | |||||||||| | |||||| |||| || ||||| ||||| Sbjct 86854 TTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAA 86795 Query 179672 CCTTAGAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGA 179731 | | |||| |||||||||||||||||||||||| | || || ||||| ||||| ||||| Sbjct 86794 CTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGA 86735 Query 179732 GACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGT 179791 ||| ||||| || || ||||| || | || |||||| | | || |||||||| | Sbjct 86734 GACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCA 86675 Query 179792 CGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 || || ||||||||||| ||||||| || || || || || ||| | || |||||||| Sbjct 86674 GGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 86615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/89 (82%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 17707 GGTTGTAGCTCAGTCGGTTAGAGCGCCTGCCTGTCACGCAGGAAGTCGAGGGTTCAAGTC 17766 |||||||| ||| | ||||||||| || ||||||||||| |||||| | |||||| |||| Sbjct 84418 GGTTGTAGTTCAAT-GGTTAGAGCACCGGCCTGTCACGCTGGAAGTTGCGGGTTCGAGTC 84476 Query 17767 CCTTCAGTCCCGTA--TGCCACTTTAGCT 17793 || ||| || |||| ||| || |||||| Sbjct 84477 CCGTCAATCTCGTAGCTGCTACATTAGCT 84505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596306409892960