Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq18 796 0.0 seq17 594 6e-165 >seq18 Length=145863 Score = 796 bits (882), Expect = 0.0 Identities = 769/985 (78%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||| | ||||| || |||||| ||||| || || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || | | ||||| || ||||| ||||| || | | ||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACTTCTGTGTTCATTATCGCATTTGTTGCTGCACCT 120512 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 ||||| |||||||| || ||||| || || || | |||||||| | || ||||||||| Sbjct 120511 CCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAAC 120452 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 ||||| |||||||||||||| || | || |||||||| ||||| |||||||| || || Sbjct 120451 ATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAATT 120392 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| || || || |||||| | |||||||||||||||| |||||| | || Sbjct 120391 TGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTA 120332 Query 169652 TTCCACTTCCTCATCGGCATCTA-TGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCG 169710 | |||||| || | ||||| | |||| |||||||||||||||||||| | || | || Sbjct 120331 TGTCACTTCTTCCTAGGCATTTGCTGCT-ACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 169711 TCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGC 169770 | | || ||||| || |||||| ||| ||||||||||| || ||||| || || | || Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 169771 TGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTAT 169830 ||| ||| | ||||||| | || ||||| || ||||| || | ||||||| ||||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 169831 CTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCC 169890 || ||||| || |||| |||| | || ||||||||||||||||||||||| |||||||| Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 169891 CTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGG 169950 |||||||||||||||||||| || ||||| ||||| || || || || |||||||| Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 169951 TAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGG 170010 | || || ||||| ||| |||||||||| || |||||||| || ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 170011 TTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGG 170070 |||||| ||||||||||||||||| || |||||||| ||||| || ||||||||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 170071 TCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGC 170130 ||| || ||||||||||||||||| ||||||||||| |||||||| ||||||||||| || Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 170131 AGCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAA 170190 || |||||||| ||||| |||||||| || ||||||||| |||| || ||||| ||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 170191 CCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 170250 ||| ||||| ||||||||||||||||| | | || ||| ||||| || ||||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 170251 CTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGC 170310 |||| ||| | |||||||||| ||||| |||||||| |||||||| | || || Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 170311 TCACAACTTCCCTCTCGACCTCGCT 170335 ||||||||||| || ||||| ||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 594 bits (658), Expect = 6e-165 Identities = 755/1029 (73%), Gaps = 16/1029 (2%) Strand=Plus/Minus Query 170592 TGGTTCGATGTCCTGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCT 170651 ||||| |||| | ||||||||| | ||||| || ||||| || || ||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 170652 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACA 170711 || || | || || || || ||||| |||||| | || |||||| | || || || ||| Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 170712 TTTGTTACAAGTTGGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTT 170770 || |||||| ||||||||| || |||||||||||||| ||| | ||||| ||| || || Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGC-AACTT 87452 Query 170771 CCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACTT 170828 | | ||||| || || ||||| || || | |||||||| || | || ||| || Sbjct 87451 CTTAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTA 87394 Query 170829 TGGGGTCCTGAGTCTCAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAAT 170888 ||||| |||||| | || || || || ||||||| || | || || || ||| | Sbjct 87393 TGGGGGCCTGAGGCACAAGGTGACTTTACTCGCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 170889 TTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATC 170948 || || || | || || |||||||| || || || || ||||| || ||||||||| | Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 170949 ---AG-TCGTCTCGTAGGGATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGC 171004 || ||| ||| | || | || ||||| || || || ||||| | ||||| || Sbjct 87273 GCAAGATCG----GTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGC 87218 Query 171005 TGTGTTTGTCAGCGTGTTCCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACC 171064 ||| || || || ||||| ||||||||| | || || ||| | |||||||| || || Sbjct 87217 TGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCC 87158 Query 171065 TTCCTTTGGAGTTGCAGCAATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTG 171124 | |||||| || || ||||||||||| || | || ||| | ||||||||||||||||| Sbjct 87157 TAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTG 87098 Query 171125 GACACTGAATCCATTTCATATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTC 171184 ||| || || || || || ||||||||||| |||||| | || || | |||| | || | Sbjct 87097 GACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATG 87038 Query 171185 TGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACAC 171244 ||||||||| || | ||||||||||| ||| | | |||||||||||| || ||||| Sbjct 87037 TGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACAC 86978 Query 171245 CTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCG 171304 || ||||| || | || || | ||||||||||| |||||||| || ||||| || Sbjct 86977 TTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCG 86918 Query 171305 TTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTAT 171364 ||| ||||| || || |||||| | || ||| || || |||||| | ||||||||||| Sbjct 86917 TTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTAT 86858 Query 171365 GCTGTTTGTTCCTGTCATGGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCT 171424 ||| ||||| ||||| | ||||||||| | ||| | || |||| || |||||||| Sbjct 86857 GCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCT 86798 Query 171425 TAATCTTAGG-GCTTATGATTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGT 171483 ||| |||| | || ||||| || || || ||| || | ||||| || || || || | Sbjct 86797 TAA-CTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAAT 86739 Query 171484 TCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCAC 171543 ||||||| ||||| || || ||||| || | || |||||| || | ||||||||||| Sbjct 86738 TCGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGG 86679 Query 171544 CAGTAGACCAACCACATGAAAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATG 171603 | ||||| ||||||||||| |||| ||||||||||| ||| |||| ||||| || | Sbjct 86678 CTCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACG 86619 Query 171604 CACTTTGAT 171612 | |||| || Sbjct 86618 CTCTTTAAT 86610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592197615337120