Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq106 163 6e-35 seq100 161 2e-34 seq99 114 3e-20 seq87 98.7 2e-15 seq93 84.2 5e-11 >seq106 Length=3132237 Score = 163 bits (180), Expect = 6e-35 Identities = 162/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2288062 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 2288121 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||||||||||| || || ||||| || Sbjct 2288122 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288181 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| ||||| || | || || Sbjct 2288182 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288241 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || || ||||| ||||| || |||| |||| Sbjct 2288242 TCCAGCGTGATGGTCTTGCCAGTCAGAGTC 2288271 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 2288515 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2288574 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||||||||||| || || ||||| || Sbjct 2288575 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288634 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || ||| | ||||| ||||| || | || || Sbjct 2288635 ATGCCCTCCTTGTCCTGGATCTTGGACTTCACGTTCTCGATGGTGTCAGAGGACTCCACC 2288694 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || || ||||| ||||| || || | |||| Sbjct 2288695 TCCAGCGTGATGGTCTTGCCAGTGAGAGTC 2288724 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | || || || |||||||||||||| || Sbjct 2288914 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGCC 2288973 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||| ||||| | || || ||||| ||| Sbjct 2288974 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGGGGA 2289033 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| | || || | ||||| ||||| |||| || || Sbjct 2289034 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTCCACC 2289093 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCT 283083 || || ||||| ||||| || |||| ||||| Sbjct 2289094 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCT 2289124 >seq100 Length=2336451 Score = 161 bits (178), Expect = 2e-34 Identities = 164/211 (78%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| || Sbjct 981220 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981161 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || ||||||||||||| || || ||||| ||| Sbjct 981160 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGA 981101 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | ||||| ||||| || | || || Sbjct 981100 ATGCCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981042 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTC 283082 || || ||||| ||||| || || | |||| Sbjct 981041 CTCCAGTGTGATGGTCTTGCCAGTGAGAGTC 981011 Score = 158 bits (174), Expect = 3e-33 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 980818 CCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 980759 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || || || ||||||||||||| ||| || ||||| || Sbjct 980758 AGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCCGGAGGG 980699 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | ||||| ||||| || | || || Sbjct 980698 ATGCCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 980640 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077 || || ||||| ||||| || |||| Sbjct 980639 CTCCAGTGTGATGGTCTTGCCAGTCA 980614 Score = 154 bits (170), Expect = 3e-32 Identities = 158/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||| || || |||||||||||||| || Sbjct 982033 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981974 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||||| || || ||||| || Sbjct 981973 AGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 981914 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || ||| | ||||| ||||| || | || || Sbjct 981913 ATTCCCTCCTTGTCCTGGATC-TTGCTCTTCACGTTCTCGATGGTGTCAGAGGACTCCAC 981855 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 981854 CTCCAGGGTGATGGTCTTGCCAGT 981831 Score = 149 bits (164), Expect = 1e-30 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| || || ||||| || | ||| || || |||||||||||||| || Sbjct 981627 CCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 981568 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||||||||| || || || ||||||||||||| || || ||||| || Sbjct 981567 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGAGGG 981508 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||| ||||| || || | ||||| ||||| || | || || Sbjct 981507 ATTCCCTCCTTGTCCTGGATC-TTGCTCTTCACATTCTCGATGGTGTCAGAGGACTCCAC 981449 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 || || ||||| ||||| || || Sbjct 981448 CTCCAGGGTGATGGTCTTGCCAGT 981425 >seq99 Length=2590953 Score = 114 bits (126), Expect = 3e-20 Identities = 148/203 (73%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | || |||| | ||||||| ||||| || Sbjct 315586 CCACCGCGCAGGCGCAGCACCAGGTGGAGGATGGACTCTTCT-GGATGTTATAGTCGGCC 315528 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | ||||| |||||||| || || ||||||||||||| || | ||||| || Sbjct 315527 AGGGGGCGGCTGTCCTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGG 315468 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||| ||| | || ||| | ||||| ||||| || | || || Sbjct 315467 ATGCCCTCCTTGTCCTGGACCTTGGACTTGACGTTCTCGATGGTGTCAGATGACTCCACC 315408 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 || | ||||| ||||| || || Sbjct 315407 TCCAAGGTGATGGTCTTGCCGGT 315385 >seq87 Length=36794 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/211 (71%), Gaps = 17/211 (8%) Strand=Plus/Plus Query 209692 GTCAGAGACAGAGTAGCGTTATCAATGCGGGAGAAGTTGCAGGTACCGGAGGGTTGGCGA 209751 ||||| ||| || ||||| || |||||||||||||||||||| |||||||| ||| | Sbjct 17223 GTCAGGTTCAGGGTGGCGTTGTCGATGCGGGAGAAGTTGCAGGTTCCGGAGGGCTGGTGC 17282 Query 209752 CCAGCGGGCTTCAGGGCGAAGGAGTACAGGTAGACACC-----AGCGGGGG----TGGCA 209802 | ||||||| || |||||||||||| || || || | | |||| ||| Sbjct 17283 TCCTCGGGCTTGAGTCCGAAGGAGTACACGTTGATGCCCTTGGACCTGGGGATGTTGG-- 17340 Query 209803 CCACCAATGGT-CTGGTAAGGCTGCACCTTGTTGAAGTAAGAGCCCTTGCGAGTGGCGAA 209861 |||| |||||| ||||||||| ||||||||| |||||| || | |||| Sbjct 17341 -----TGTGGTGCTGGTAGGGCTGCACCAGGTTGAAGTACGAGCCCAGACGCTCGTCGAA 17395 Query 209862 ACGATCTTGACCGTTCAGCTGGATCTTGGCG 209892 | || || ||||| ||||| | |||| || Sbjct 17396 CCTGTCGTGGCCGTTGAGCTGCAGCTTGCCG 17426 Score = 93.3 bits (102), Expect = 9e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 210133 CCAGTGAACTGTAGCTGTTCGATCAGGTACTCGTGGGGTAGCTGGGCGAAACGAGTACGT 210192 || |||||||| ||||| ||||||||||||||||||| | ||||||||| | || Sbjct 17592 CCGGTGAACTGCAGCTGCTCGATCAGGTACTCGTGGGAGACCTGGGCGAACCTGCGGCGC 17651 Query 210193 TCCTGGGTGTCCAGGAAGATGTAGTCCACCCACA 210226 || | |||||||||| ||| |||||||||||||| Sbjct 17652 TCGTCGGTGTCCAGGTAGACGTAGTCCACCCACA 17685 >seq93 Length=1853137 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 317076 CTTGCCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACG 317135 |||||| ||||| ||||| ||||| || || || || |||||||| || | || Sbjct 1282257 CTTGCCGGCACCGTTGGGCCCGCACAGGCCGTAGCGGCGGCCCTTCTTGAGGCGCAGGCG 1282198 Query 317136 GGTGTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTC 317195 ||||||||| || || ||||| |||| || ||||| ||||| || || |||||||| Sbjct 1282197 GGTGTTGTTGAGCAGGATCTTGGCACCGTAGGCCAGGGAGAAGGTGCAGTCGCACAGGTC 1282138 Query 317196 CTCGCC 317201 |||||| Sbjct 1282137 CTCGCC 1282132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737778397324