Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq100 156 3e-33 seq106 147 2e-30 seq99 109 4e-19 >seq100 Length=2336451 Score = 156 bits (172), Expect = 3e-33 Identities = 167/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| Sbjct 980825 TTGCATGCCTCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 980766 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| ||| ||| | || ||||||||||| ||||||||||||| ||||||||| || Sbjct 980765 GTCGGCCAGTGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTC 980706 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | ||| | || ||||| ||| ||||| |||| | |||| | |||||||| | || Sbjct 980705 CGGAGGGATGCCCTCCTTGTCCTGGATCTTGCTCTTC-ACGTTCTCGATGGTGTCAGAGG 980647 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 | |||||||||| || || ||||| || || |||||| Sbjct 980646 ACTCCACCTCCAGTGTGATGGTCTTGCCAGTCAGGGTC 980609 Score = 150 bits (166), Expect = 1e-31 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | || ||||||||| || ||| |||||| ||||||||||| ||||| Sbjct 982034 TCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 981975 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || ||| |||| ||||||||||| ||||||||||||| |||||||| || | || Sbjct 981974 CAGCGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGG 981915 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCA 44288 | || ||||| ||| ||||| |||| | |||| | |||||||| | ||| |||| Sbjct 981914 GATTCCCTCCTTGTCCTGGATCTTGCTCTTC-ACGTTCTCGATGGTGTCAGAGGACTCCA 981856 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 |||||| || || ||||| || ||||||||| Sbjct 981855 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 981824 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 981224 CATGCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 981165 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| | || ||||||||||| ||||||||||||| |||||||| || | Sbjct 981164 GGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGG 981105 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| ||||| |||| | |||| | |||||||| | ||| | Sbjct 981104 AGGAATGCCCTCCTTGTCCTGGATCTTGCTCTTC-ACGTTCTCGATGGTGTCAGAGGACT 981046 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 ||||||||| || || ||||| || ||||| ||| Sbjct 981045 CCACCTCCAGTGTGATGGTCTTGCCAGTGAGAGTC 981011 Score = 147 bits (162), Expect = 2e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || Sbjct 981631 CATGCCACCACGCAGACGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 981572 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| | || ||||||||||| ||||||||||||| |||||||| || | Sbjct 981571 GGCCAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGG 981512 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | || ||||| ||| ||||| ||||| | | |||||||| | ||| || Sbjct 981511 AGGGATTCCCTCCTTGTCCTGGATCTTGCTCTTCACATTCTCGATGGTGTCAGAGGACTC 981452 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 |||||||| || || ||||| || ||||||||| Sbjct 981451 CACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 981418 >seq106 Length=3132237 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || || | ||| | || ||||||||| || ||| |||||| ||||||||||| Sbjct 2288508 TTGCATGCCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 2288567 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||||| || ||| | || ||||||||||| ||||||||||||| |||||||| || Sbjct 2288568 GTCGGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 2288627 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| ||||| |||| | |||| | |||||||| | || Sbjct 2288628 CGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTCTCGATGGTGTCAGAGG 2288686 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 | |||||||||| ||| || ||||| || ||||| ||| Sbjct 2288687 ACTCCACCTCCAGCGTGATGGTCTTGCCAGTGAGAGTC 2288724 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || ||| |||||| ||||||||||| || || Sbjct 2288062 CCACCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCC 2288121 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| ||||||||||||| |||||||| || | || Sbjct 2288122 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2288181 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| |||| | |||| | |||||||| | ||| ||||| Sbjct 2288182 ATGCCCTCCTTGTCCTGGATCTTGGACTTC-ACGTTCTCGATGGTGTCAGAGGACTCCAC 2288240 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 ||||| ||| || ||||| || || || ||| Sbjct 2288241 CTCCAGCGTGATGGTCTTGCCAGTCAGAGTC 2288271 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| | || ||||||||| || || |||||| ||||||||||| || Sbjct 2288910 CATGCCACCACGCAGGCGCAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 2288969 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||| || ||| | || ||||||||||| ||||| ||||| | |||||||| |||| Sbjct 2288970 GGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGG 2289029 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | || | |||||||| | || || Sbjct 2289030 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTTTCGATGGTGTCAGAAGACTC 2289089 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 |||||| | || || ||||| || || || |||| || Sbjct 2289090 CACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTGCA 2289127 >seq99 Length=2590953 Score = 109 bits (120), Expect = 4e-19 Identities = 153/211 (73%), Gaps = 3/211 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||||||| || || ||| || |||||||| || ||||| Sbjct 315586 CCACCGCGCAGGCGCAGCACCAGGTGGAGGATGGACTC-TTCTGGATGTTATAGTCGGCC 315528 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| ||| || |||||||| ||||||||||||| |||| ||| || | || Sbjct 315527 AGGGGGCGGCTGTCCTCTAGCTGCTTACCGGCAAAGATCAGGCGCTACTGGTCCGGGGGG 315468 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| | ||| ||| | |||| | |||||||| | || ||||| Sbjct 315467 ATGCCCTCCTTGTCCTGGACCTTGGACTT-GACGTTCTCGATGGTGTCAGATGACTCCAC 315409 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTC 44320 ||||| || || ||||| || ||||||||| Sbjct 315408 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTC 315378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359989934937402