Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq100 150 4e-31 seq106 147 5e-30 seq99 118 3e-21 >seq100 Length=2336451 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || ||||| || || || |||||||| |||||||| ||| |||||||||||||| || Sbjct 981419 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAATGTG 981478 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || |||||||||||||||||||| || || ||||| ||| Sbjct 981479 AAGAGCAAGATCCAGGACAAGGAGGGAATCCCTCCGGACCAGCAGCGCCTGATCTTTGCC 981538 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || ||||| || ||| |||| || || || || Sbjct 981539 GGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 981598 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 981599 CTCCACCTGGT 981609 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 |||||||| || || || ||||| || |||||||| ||| ||||||||||||||||| Sbjct 981012 ACTCTCACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 981071 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || || || |||||||||||||| || || ||||| ||| Sbjct 981072 AAGAGCAAGATCCAGGACAAGGAGGGCATTCCTCCGGACCAGCAGCGCCTGATCTTTGCC 981131 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || ||||| || ||| |||| || || || || Sbjct 981132 GGCAAGCAGCTGGAGGATGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 981191 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 981192 CTCCACCTGGT 981202 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || ||||| || || || |||||||| |||||||| ||| ||||||||||||||||| Sbjct 981825 ACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 981884 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || |||||||| ||||||||||| || || ||||| ||| Sbjct 981885 AAGAGCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 981944 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || || || | || || ||||| || ||| |||| || || || || Sbjct 981945 GGCAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAACATCCAGAAGGAGTCCACC 982004 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 982005 CTCCACCTGGT 982015 Score = 141 bits (156), Expect = 2e-28 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || || || || || || ||||| || |||||||| ||| ||||||||||||||||| Sbjct 980610 ACCCTGACTGGCAAGACCATCACACTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 980669 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || || ||||||||||||||||| || || ||||| ||| Sbjct 980670 AAGAGCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTGATCTTTGCC 980729 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || ||||| || ||| |||| || || || || Sbjct 980730 GGCAAGCAGCTGGAGGATGGCCGCACACTGGCCGACTACAACATCCAGAAGGAGTCCACC 980789 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 980790 CTCCACCTGGT 980800 >seq106 Length=3132237 Score = 147 bits (162), Expect = 5e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 |||||||| || || || ||||| || |||||||| ||| ||||||||||||||||| Sbjct 2288723 ACTCTCACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288664 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || || ||||| ||||||||||| || || ||||| ||| Sbjct 2288663 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288604 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || ||||| || ||| |||| || || || || Sbjct 2288603 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCCACC 2288544 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 2288543 CTCCACCTGGT 2288533 Score = 138 bits (152), Expect = 3e-27 Identities = 145/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||||| || || || || ||||| || |||||||| ||| ||||||||||||||||| Sbjct 2288270 ACTCTGACTGGCAAGACCATCACGCTGGAGGTGGAGTCCTCTGACACCATCGAGAACGTG 2288211 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || || ||||| ||||||||||| || || ||||| ||| Sbjct 2288210 AAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTTTGCC 2288151 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || || || || ||| |||| || || || || Sbjct 2288150 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTACAACATCCAGAAGGAGTCCACC 2288091 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 2288090 CTCCACCTGGT 2288080 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 ||||| || || || || |||||||| |||||||| || ||||||||||| || ||| Sbjct 2289122 ACTCTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCTGACACCATCGAAAATGTC 2289063 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||||| |||||||| || || || || || |||||||| || || ||||||||| Sbjct 2289062 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAGCAGCGCCTCATCTTCGCC 2289003 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACA 178118 || || ||||| || ||||| | || || ||||| || ||| |||| || || || || Sbjct 2289002 GGCAAGCAGCTGGAGGATGGCCGCACCCTGGCCGACTACAACATCCAGAAGGAGTCTACC 2288943 Query 178119 CTGCATCTTGT 178129 || || || || Sbjct 2288942 CTCCACCTGGT 2288932 >seq99 Length=2590953 Score = 118 bits (130), Expect = 3e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 177939 ACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTC 177998 || ||||| || || || |||||| | |||||||| || |||||||||||||||||| Sbjct 315379 ACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGTCATCTGACACCATCGAGAACGTC 315438 Query 177999 AAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCC 178058 || ||| | |||||||| || || ||||| ||||||||| | || || ||||| ||| Sbjct 315439 AAGTCCAAGGTCCAGGACAAGGAGGGCATCCCCCCGGACCAGTAGCGCCTGATCTTTGCC 315498 Query 178059 GGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 || || ||||| || || | | | || ||||| |||||| |||| || Sbjct 315499 GGTAAGCAGCTAGAGGACAGCCGCCCCCTGGCCGACTATAACATCCAGAA 315548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729565182564